Conservation of cofitness between GFF3485 and GFF3007 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

51 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF3485 Selenide,water dikinase (EC 2.7.9.3) 1.0 GFF3007 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-) 0.57 11
Escherichia fergusonii Becca 0.95 EFB2_02230 Selenide, water dikinase 0.91 EFB2_00996 2-octaprenylphenol hydroxylase low > 86
Escherichia coli ECRC99 0.94 KEDOAH_01285 selD selenide, water dikinase SelD 0.90 KEDOAH_08625 ubiI FAD-dependent 2-octaprenylphenol hydroxylase
Escherichia coli ECRC98 0.94 JDDGAC_01400 selD selenide, water dikinase SelD 0.90 JDDGAC_23155 ubiI FAD-dependent 2-octaprenylphenol hydroxylase
Escherichia coli Nissle 1917 0.94 ECOLIN_RS09835 selenide, water dikinase SelD 0.90 ECOLIN_RS16180 FAD-dependent 2-octaprenylphenol hydroxylase
Escherichia coli ECRC100 0.94 OKFHMN_26825 selD selenide, water dikinase SelD 0.90 OKFHMN_19515 ubiI FAD-dependent 2-octaprenylphenol hydroxylase low > 79
Escherichia coli ECRC101 0.94 MCAODC_18585 selD selenide, water dikinase SelD 0.90 MCAODC_10035 ubiI FAD-dependent 2-octaprenylphenol hydroxylase
Escherichia coli ECRC102 0.94 NIAGMN_01240 selD selenide, water dikinase SelD 0.90 NIAGMN_17280 ubiI FAD-dependent 2-octaprenylphenol hydroxylase
Escherichia coli ECOR38 0.94 HEPCGN_05195 selD selenide, water dikinase SelD 0.90 HEPCGN_18805 ubiI FAD-dependent 2-octaprenylphenol hydroxylase
Escherichia coli BW25113 0.94 b1764 selD selenophosphate synthetase (NCBI) 0.90 b2906 visC hypothetical protein (NCBI) 0.42 8
Escherichia coli HS(pFamp)R (ATCC 700891) 0.94 OHPLBJKB_01968 Selenide, water dikinase 0.90 OHPLBJKB_00809 2-octaprenylphenol hydroxylase low > 74
Escherichia coli BL21 0.94 ECD_01733 selenophosphate synthase 0.90 ECD_02738 2-octaprenylphenol hydroxylase, FAD-dependent low > 61
Escherichia coli ECRC62 0.93 BNILDI_16120 selD selenide, water dikinase SelD 0.90 BNILDI_09960 ubiI FAD-dependent 2-octaprenylphenol hydroxylase low > 75
Escherichia coli ECOR27 0.93 NOLOHH_17335 selD selenide, water dikinase SelD 0.90 NOLOHH_11425 ubiI FAD-dependent 2-octaprenylphenol hydroxylase low > 76
Enterobacter sp. TBS_079 0.93 MPMX20_01852 Selenide, water dikinase 0.88 MPMX20_03765 2-octaprenylphenol hydroxylase
Enterobacter asburiae PDN3 0.92 EX28DRAFT_1765 selenophosphate synthase (EC 2.7.9.3) 0.88 EX28DRAFT_2958 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family low > 76
Klebsiella pneumoniae MKP103 0.88 KDGMDA_19280 selenide water dikinase SelD 0.87 KDGMDA_04385 FAD-dependent 2-octaprenylphenol hydroxylase
Klebsiella michiganensis M5al 0.86 BWI76_RS11600 selenide, water dikinase SelD 0.88 BWI76_RS23885 2-octaprenylphenol hydroxylase low > 92
Serratia liquefaciens MT49 0.78 IAI46_14315 selenide, water dikinase SelD 0.72 IAI46_20865 FAD-dependent 2-octaprenylphenol hydroxylase
Pseudomonas sp. BP01 0.64 JOY50_RS22915 selD selenide, water dikinase SelD 0.36 JOY50_RS22430 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
Pseudomonas putida KT2440 0.64 PP_0823 Selenide, water dikinase 0.36 PP_5197 putative oxidoreductase involved in anerobic synthesis of ubiquinone, FAD/NAD(P)-binding domain
Pseudomonas sp. SVBP6 0.64 COO64_RS03760 selD selenide, water dikinase SelD 0.37 COO64_RS00975 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
Pseudomonas stutzeri RCH2 0.63 Psest_2462 selenium donor protein 0.35 Psest_0178 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
Pseudomonas syringae pv. syringae B728a 0.63 Psyr_0696 selenophosphate synthase 0.38 Psyr_0323 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase / 2-octaprenyl-6-methoxyphenol hydroxylase
Pseudomonas syringae pv. syringae B728a ΔmexB 0.63 Psyr_0696 selenophosphate synthase 0.38 Psyr_0323 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase / 2-octaprenyl-6-methoxyphenol hydroxylase
Pseudomonas sp. S08-1 0.63 OH686_21210 selenide, water dikinase 0.37 OH686_11190 2-polyprenylphenol hydroxylase
Pseudomonas fluorescens FW300-N2E3 0.63 AO353_00050 selenide, water dikinase 0.37 AO353_08750 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
Pseudomonas lactucae CFBP13502 0.63 GEMAOFIL_02182 Selenide, water dikinase 0.39 GEMAOFIL_05592 2-octaprenylphenol hydroxylase
Pseudomonas fluorescens FW300-N2E2 0.63 Pf6N2E2_2151 Selenide,water dikinase (EC 2.7.9.3) 0.37 Pf6N2E2_4482 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-)
Pseudomonas orientalis W4I3 0.62 QF045_RS12440 selenide, water dikinase SelD 0.37 QF045_RS01640 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_01395 selenide, water dikinase 0.37 AO356_13020 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
Acidovorax sp. GW101-3H11 0.62 Ac3H11_1765 Selenide,water dikinase (EC 2.7.9.3) 0.17 Ac3H11_4879 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-) low > 79
Pseudomonas sp. RS175 0.62 PFR28_01285 Selenide, water dikinase 0.37 PFR28_04319 2-octaprenylphenol hydroxylase
Pseudomonas simiae WCS417 0.62 PS417_10460 selenide, water dikinase 0.38 PS417_27270 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
Pseudomonas aeruginosa PA14 0.62 IKLFDK_07875 selenide water dikinase SelD 0.37 IKLFDK_27365 2-octaprenyl-3-methyl-6-methoxy-1 4-benzoquinol hydroxylase
Pseudomonas aeruginosa MRSN321 0.62 DY961_RS19860 selD;go_function=selenide%2C selenide water dikinase SelD 0.37 DY961_RS11975 2-octaprenyl-3-methyl-6-methoxy-1 4-benzoquinol hydroxylase
Pseudomonas aeruginosa PUPa3 0.62 DQ20_RS53965 selD;go_function=selenide%2C selenide water dikinase SelD 0.37 DQ20_RS50140 2-octaprenyl-3-methyl-6-methoxy-1 4-benzoquinol hydroxylase
Pseudomonas fluorescens FW300-N1B4 0.62 Pf1N1B4_97 Selenide,water dikinase (EC 2.7.9.3) 0.38 Pf1N1B4_2231 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-)
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_2462 Selenide,water dikinase (EC 2.7.9.3) 0.37 PfGW456L13_899 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-)
Pseudomonas segetis P6 0.61 MPMX49_02674 Selenide, water dikinase 0.36 MPMX49_04484 2-octaprenylphenol hydroxylase
Pseudomonas sp. DMC3 0.61 GFF1384 Selenide, water dikinase 0.37 GFF313 2-octaprenylphenol hydroxylase
Shewanella loihica PV-4 0.60 Shew_0135 selenide, water dikinase (RefSeq) 0.51 Shew_3065 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.60 Sama_0190 selenide, water dikinase (RefSeq) 0.50 Sama_2722 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase (RefSeq)
Shewanella oneidensis MR-1 0.59 SO0196 selD selenide, water dikinase (NCBI ptt file) 0.51 SO0778 oxidoreductase, FAD-binding, UbiH/Coq6 family (NCBI ptt file)
Shewanella sp. ANA-3 0.58 Shewana3_0176 selenophosphate synthase (RefSeq) 0.51 Shewana3_3502 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (RefSeq)
Paraburkholderia sabiae LMG 24235 0.48 QEN71_RS20070 selenide, water dikinase SelD 0.23 QEN71_RS27595 UbiH/UbiF family hydroxylase
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_06382 selenophosphate synthase 0.23 H281DRAFT_05706 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
Dechlorosoma suillum PS 0.44 Dsui_2309 selenium donor protein 0.25 Dsui_1092 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF807 Selenide,water dikinase (EC 2.7.9.3) 0.17 GFF625 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-)
Variovorax sp. SCN45 0.43 GFF5649 Selenide,water dikinase (EC 2.7.9.3) 0.16 GFF2133 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
Variovorax sp. OAS795 0.43 ABID97_RS08115 selenide, water dikinase SelD 0.17 ABID97_RS24790 FAD-dependent monooxygenase
Castellaniella sp019104865 MT123 0.43 ABCV34_RS06660 selenide, water dikinase SelD 0.16 ABCV34_RS10260 FAD-dependent monooxygenase

Not shown: 12 genomes with orthologs for GFF3485 only; 20 genomes with orthologs for GFF3007 only