Conservation of cofitness between GFF3315 and GFF2584 in Variovorax sp. SCN45

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Variovorax sp. SCN45 1.0 GFF3315 Cu(I)-responsive transcriptional regulator 1.0 GFF2584 Sulfate permease 0.57 4
Variovorax sp. OAS795 0.92 ABID97_RS02815 Cu(I)-responsive transcriptional regulator 0.80 ABID97_RS07465 SulP family inorganic anion transporter low > 91
Azospirillum sp. SherDot2 0.62 MPMX19_04396 HTH-type transcriptional regulator HmrR 0.26 MPMX19_02770 C4-dicarboxylic acid transporter DauA low > 112
Sinorhizobium meliloti 1021 0.60 SM_b21579 MerR family transcriptional regulator 0.25 SMc00476 transport transmembrane protein low > 103
Dechlorosoma suillum PS 0.59 Dsui_1064 Cu(I)-responsive transcriptional regulator 0.46 Dsui_1250 sulfate permease-like transporter, MFS superfamily low > 51
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF4249 Cu(I)-responsive transcriptional regulator 0.26 GFF2781 Putative sulfate permease low > 78
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_08070 transcriptional regulator 0.26 AO356_16580 transporter low > 104
Pseudomonas sp. RS175 0.58 PFR28_05243 HTH-type transcriptional regulator HmrR 0.25 PFR28_03638 C4-dicarboxylic acid transporter DauA low > 88
Pseudomonas fluorescens FW300-N1B4 0.58 Pf1N1B4_1263 Cu(I)-responsive transcriptional regulator 0.26 Pf1N1B4_2936 Putative sulfate permease low > 87
Pseudomonas fluorescens FW300-N2E2 0.57 Pf6N2E2_3488 Cu(I)-responsive transcriptional regulator 0.26 Pf6N2E2_5239 Putative sulfate permease low > 103
Ralstonia solanacearum PSI07 0.57 RPSI07_RS08315 Cu(I)-responsive transcriptional regulator 0.13 RPSI07_RS00365 SulP family inorganic anion transporter low > 81
Pseudomonas fluorescens FW300-N2E3 0.56 AO353_06160 transcriptional regulator 0.27 AO353_10315 sulfate transporter low > 101
Ralstonia solanacearum IBSBF1503 0.56 RALBFv3_RS08955 Cu(I)-responsive transcriptional regulator 0.12 RALBFv3_RS22855 SulP family inorganic anion transporter low > 76
Ralstonia solanacearum UW163 0.56 UW163_RS04655 Cu(I)-responsive transcriptional regulator 0.12 UW163_RS23475 SulP family inorganic anion transporter — —
Paraburkholderia bryophila 376MFSha3.1 0.56 H281DRAFT_04982 transcriptional regulator, MerR family 0.21 H281DRAFT_01715 sulfate permease, SulP family low > 103
Magnetospirillum magneticum AMB-1 0.53 AMB_RS09150 Cu(I)-responsive transcriptional regulator 0.32 AMB_RS18695 sodium-independent anion transporter low > 64
Pseudomonas stutzeri RCH2 0.53 Psest_0737 Cu(I)-responsive transcriptional regulator 0.24 Psest_3240 Sulfate permease and related transporters (MFS superfamily) low > 67
Shewanella amazonensis SB2B 0.49 Sama_1785 MerR family transcriptional regulator (RefSeq) 0.22 Sama_1067 putative sulfate transporter YchM (RefSeq) low > 62
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS01745 heavy metal-responsive transcriptional regulator 0.14 ABZR86_RS08195 SulP family inorganic anion transporter low > 74
Escherichia fergusonii Becca 0.38 EFB2_03572 HTH-type transcriptional regulator CueR 0.25 EFB2_02721 C4-dicarboxylic acid transporter DauA low > 86
Escherichia coli Nissle 1917 0.38 ECOLIN_RS02880 Cu(I)-responsive transcriptional regulator 0.25 ECOLIN_RS07295 C4-dicarboxylic acid transporter DauA — —
Escherichia coli ECOR38 0.38 HEPCGN_06670 cueR Cu(I)-responsive transcriptional regulator 0.25 HEPCGN_24890 dauA C4-dicarboxylic acid transporter DauA low > 87
Escherichia coli ECRC101 0.38 MCAODC_27250 cueR Cu(I)-responsive transcriptional regulator 0.25 MCAODC_21835 dauA C4-dicarboxylic acid transporter DauA low > 87
Escherichia coli ECRC98 0.38 JDDGAC_11680 cueR Cu(I)-responsive transcriptional regulator 0.25 JDDGAC_06150 dauA C4-dicarboxylic acid transporter DauA low > 86
Enterobacter asburiae PDN3 0.38 EX28DRAFT_2473 Cu(I)-responsive transcriptional regulator 0.26 EX28DRAFT_0825 high affinity sulphate transporter 1 low > 76
Escherichia coli ECRC100 0.38 OKFHMN_08035 cueR Cu(I)-responsive transcriptional regulator 0.25 OKFHMN_28425 dauA C4-dicarboxylic acid transporter DauA low > 80
Escherichia coli ECRC99 0.38 KEDOAH_19935 cueR Cu(I)-responsive transcriptional regulator 0.25 KEDOAH_25420 dauA C4-dicarboxylic acid transporter DauA — —
Escherichia coli ECRC102 0.38 NIAGMN_06085 cueR Cu(I)-responsive transcriptional regulator 0.25 NIAGMN_27810 dauA C4-dicarboxylic acid transporter DauA — —
Shewanella sp. ANA-3 0.37 Shewana3_2762 MerR family transcriptional regulator (RefSeq) 0.25 Shewana3_3154 putative sulfate transporter YchM (RefSeq) — —
Escherichia coli ECOR27 0.37 NOLOHH_01000 cueR Cu(I)-responsive transcriptional regulator 0.26 NOLOHH_20635 dauA C4-dicarboxylic acid transporter DauA low > 75
Escherichia coli BL21 0.37 ECD_00438 copper-responsive regulon transcriptional regulator 0.25 ECD_01181 C4-dicarboxylic acid transporter low > 61
Escherichia coli BW25113 0.37 b0487 cueR DNA-binding transcriptional activator of copper-responsive regulon genes (NCBI) 0.25 b1206 ychM orf, hypothetical protein (VIMSS) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_03187 HTH-type transcriptional regulator CueR 0.25 OHPLBJKB_02481 C4-dicarboxylic acid transporter DauA low > 73
Escherichia coli ECRC62 0.37 BNILDI_22420 cueR Cu(I)-responsive transcriptional regulator 0.25 BNILDI_18790 dauA C4-dicarboxylic acid transporter DauA low > 75
Enterobacter sp. TBS_079 0.37 MPMX20_01085 HTH-type transcriptional regulator CueR 0.26 MPMX20_02641 C4-dicarboxylic acid transporter DauA low > 85
Rahnella sp. WP5 0.36 EX31_RS22580 Cu(I)-responsive transcriptional regulator 0.25 EX31_RS07290 C4-dicarboxylic acid transporter DauA low > 89
Marinobacter adhaerens HP15 0.36 HP15_89 transcriptional regulator, MerR family protein 0.26 HP15_3240 sulfate permease family protein low > 73
Shewanella oneidensis MR-1 0.35 SO1687 transcriptional regulator, MerR family (NCBI ptt file) 0.26 SO3553 sulfate permease family protein (NCBI ptt file) low > 76
Klebsiella michiganensis M5al 0.35 BWI76_RS06910 transcriptional regulator 0.28 BWI76_RS17465 C4-dicarboxylic acid transporter DauA low > 92
Pectobacterium carotovorum WPP14 0.35 HER17_RS15620 Cu(I)-responsive transcriptional regulator 0.24 HER17_RS09730 C4-dicarboxylic acid transporter DauA low > 75
Dickeya dadantii 3937 0.35 DDA3937_RS05850 Cu(I)-responsive transcriptional regulator 0.24 DDA3937_RS12220 C4-dicarboxylic acid transporter DauA low > 74
Dickeya dianthicola 67-19 0.35 HGI48_RS05895 Cu(I)-responsive transcriptional regulator 0.24 HGI48_RS12310 C4-dicarboxylic acid transporter DauA low > 71
Dickeya dianthicola ME23 0.35 DZA65_RS06230 Cu(I)-responsive transcriptional regulator 0.24 DZA65_RS12750 C4-dicarboxylic acid transporter DauA low > 75
Vibrio cholerae E7946 ATCC 55056 0.29 CSW01_04975 transcriptional regulator 0.29 CSW01_14410 sodium-independent anion transporter low > 62

Not shown: 25 genomes with orthologs for GFF3315 only; 19 genomes with orthologs for GFF2584 only