Conservation of cofitness between HP15_527 and HP15_2266 in Marinobacter adhaerens HP15

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Marinobacter adhaerens HP15 1.0 HP15_527 pseudouridine synthase, RluA family 1.0 HP15_2266 rRNA (guanine-N(2)-)-methyltransferase 0.53 2
Pseudomonas sp. S08-1 0.61 OH686_16410 LSU rRNA pseudouridine(1911/1915/1917) synthase 0.30 OH686_06345 16S rRNA (guanine(1207)-N(2))-methyltransferase low > 80
Pseudomonas putida KT2440 0.60 PP_0623 23S rRNA pseudouridine(1911,1915,1917) synthase 0.30 PP_0761 Ribosomal RNA small subunit methyltransferase C — —
Pseudomonas fluorescens FW300-N2C3 0.60 AO356_15925 ribosomal large subunit pseudouridine synthase D 0.30 AO356_06940 16S rRNA methyltransferase 0.38 17
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_0726 ribosomal large subunit pseudouridine synthase D 0.30 Psyr_0986 16S rRNA m(2)G 1207 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_0726 ribosomal large subunit pseudouridine synthase D 0.30 Psyr_0986 16S rRNA m(2)G 1207 methyltransferase low > 86
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_14220 ribosomal large subunit pseudouridine synthase D 0.31 AO353_14995 16S rRNA methyltransferase 0.37 23
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.30 PFLU_RS04570 class I SAM-dependent methyltransferase low > 109
Pseudomonas fluorescens SBW25 0.59 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.30 PFLU_RS04570 class I SAM-dependent methyltransferase low > 109
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_5127 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.30 Pf6N2E2_3247 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) — —
Pseudomonas fluorescens GW456-L13 0.59 PfGW456L13_1493 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.30 PfGW456L13_1616 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) — —
Pseudomonas stutzeri RCH2 0.59 Psest_0709 pseudouridine synthase, RluA family 0.30 Psest_3224 16S RNA G1207 methylase RsmC 0.26 44
Pseudomonas sp. RS175 0.59 PFR28_03748 Ribosomal large subunit pseudouridine synthase D 0.30 PFR28_03623 Ribosomal RNA small subunit methyltransferase C 0.40 5
Pseudomonas fluorescens FW300-N1B4 0.59 Pf1N1B4_2822 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.30 Pf1N1B4_2953 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) — —
Pseudomonas simiae WCS417 0.59 PS417_03820 ribosomal large subunit pseudouridine synthase D 0.31 PS417_04525 16S rRNA methyltransferase — —
Shewanella loihica PV-4 0.56 Shew_2950 RluA family pseudouridine synthase (RefSeq) 0.25 Shew_3230 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) 0.74 1
Shewanella sp. ANA-3 0.55 Shewana3_3171 ribosomal large subunit pseudouridine synthase D (RefSeq) 0.24 Shewana3_3447 16S rRNA m(2)G 1207 methyltransferase (RefSeq) 0.58 28
Dickeya dadantii 3937 0.55 DDA3937_RS16110 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.24 DDA3937_RS03190 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.92 1
Dickeya dianthicola 67-19 0.54 HGI48_RS16235 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.25 HGI48_RS03340 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.69 68
Dickeya dianthicola ME23 0.54 DZA65_RS17330 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.24 DZA65_RS03385 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 75
Shewanella amazonensis SB2B 0.54 Sama_2605 pseudouridylate synthase (RefSeq) 0.24 Sama_0569 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) — —
Rahnella sp. WP5 0.54 EX31_RS07570 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.24 EX31_RS04120 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.82 3
Erwinia tracheiphila SCR3 0.54 LU632_RS16945 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.25 LU632_RS03750 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 74
Xanthomonas campestris pv. campestris strain 8004 0.53 Xcc-8004.1362.1 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.10 Xcc-8004.4612.1 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) low > 74
Serratia liquefaciens MT49 0.53 IAI46_03985 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.24 IAI46_02860 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 86
Klebsiella michiganensis M5al 0.53 BWI76_RS21450 23S rRNA pseudouridine(1911/1915/1917) synthase 0.23 BWI76_RS04080 16S rRNA (guanine(1207)-N(2))-methyltransferase 0.26 45
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.53 GFF4182 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.25 GFF1031 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) low > 78
Escherichia coli Nissle 1917 0.53 ECOLIN_RS14675 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.24 ECOLIN_RS25090 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 52
Escherichia coli BW25113 0.53 b2594 rluD 23S rRNA pseudouridine synthase (NCBI) 0.24 b4371 rsmC 16S ribosomal RNA m2G1207 methyltransferase (NCBI) — —
Escherichia fergusonii Becca 0.53 EFB2_01296 Ribosomal large subunit pseudouridine synthase D 0.24 EFB2_04076 Ribosomal RNA small subunit methyltransferase C 0.44 53
Escherichia coli ECRC62 0.53 BNILDI_11730 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.24 BNILDI_07980 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.53 OHPLBJKB_01112 Ribosomal large subunit pseudouridine synthase D 0.24 OHPLBJKB_03691 Ribosomal RNA small subunit methyltransferase C 0.57 2
Escherichia coli BL21 0.53 ECD_02484 23S rRNA pseudouridine(1911,1915,1917) synthase 0.24 ECD_04246 16S rRNA m(2)G1207 methyltransferase, SAM-dependent 0.69 34
Escherichia coli ECOR27 0.53 NOLOHH_12925 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.23 NOLOHH_03620 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.60 53
Pectobacterium carotovorum WPP14 0.53 HER17_RS05400 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.24 HER17_RS18080 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 75
Rhodanobacter denitrificans MT42 0.53 LRK55_RS04745 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.09 LRK55_RS15685 class I SAM-dependent methyltransferase 0.77 4
Escherichia coli ECRC101 0.53 OKFHMN_21250 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.24 OKFHMN_11300 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC — —
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS04965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.09 LRK54_RS15930 class I SAM-dependent methyltransferase 0.77 2
Escherichia coli ECRC98 0.53 JDDGAC_24915 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.24 JDDGAC_14895 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC — —
Enterobacter asburiae PDN3 0.53 EX28DRAFT_2695 pseudouridine synthase, RluA family 0.22 EX28DRAFT_3579 16S RNA G1207 methylase RsmC low > 76
Escherichia coli ECRC102 0.53 NIAGMN_19020 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.24 NIAGMN_09150 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC — —
Escherichia coli ECOR38 0.53 HEPCGN_20375 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.24 HEPCGN_09305 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 85
Escherichia coli ECRC101 0.53 MCAODC_11780 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.24 MCAODC_01815 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC — —
Escherichia coli ECRC99 0.53 KEDOAH_06970 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.24 KEDOAH_16845 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC — —
Pantoea sp. MT58 0.51 IAI47_04425 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.22 IAI47_16375 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.44 18
Rhodanobacter sp. FW510-T8 0.51 OKGIIK_01790 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.10 OKGIIK_09055 rsmC 16S rRNA G1207 methylase RsmC low > 52
Acinetobacter radioresistens SK82 0.43 MPMX26_00735 Ribosomal large subunit pseudouridine synthase D 0.21 MPMX26_02491 Ribosomal RNA small subunit methyltransferase C low > 36
Rhizobium sp. OAE497 0.37 ABIE40_RS14790 RluA family pseudouridine synthase 0.10 ABIE40_RS00360 class I SAM-dependent methyltransferase 0.58 36
Magnetospirillum magneticum AMB-1 0.35 AMB_RS16095 RluA family pseudouridine synthase 0.10 AMB_RS12450 class I SAM-dependent methyltransferase low > 64
Sinorhizobium meliloti 1021 0.35 SMc00647 ribosomal large subunit pseudouridine synthase 0.08 SMc00325 hypothetical protein 0.84 10

Not shown: 44 genomes with orthologs for HP15_527 only; 1 genomes with orthologs for HP15_2266 only