Conservation of cofitness between Psest_0532 and Psest_2306 in Pseudomonas stutzeri RCH2

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_0532 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 1.0 Psest_2306 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA 0.31 5
Pseudomonas sp. S08-1 0.88 OH686_09215 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.64 OH686_03955 tRNA-(ms[2]io[6]A)-hydroxylase low > 80
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_06375 (dimethylallyl)adenosine tRNA methylthiotransferase 0.62 AO353_22955 tRNA hydroxylase low > 101
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_2712 tRNA-i(6)A37 methylthiotransferase 0.62 Pf1N1B4_4567 tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-) low > 87
Pseudomonas syringae pv. syringae B728a 0.85 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.70 Psyr_1728 tRNA--hydroxylase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.85 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.70 Psyr_1728 tRNA--hydroxylase low > 86
Pseudomonas fluorescens FW300-N2C3 0.85 AO356_15410 (dimethylallyl)adenosine tRNA methylthiotransferase 0.63 AO356_24405 tRNA hydroxylase low > 104
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_5018 tRNA-i(6)A37 methylthiotransferase 0.62 Pf6N2E2_568 tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-) low > 103
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_1380 tRNA-i(6)A37 methylthiotransferase 0.62 PfGW456L13_3375 tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-) low > 87
Pseudomonas fluorescens SBW25-INTG 0.85 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 PFLU_RS17005 tRNA hydroxylase low > 109
Pseudomonas sp. RS175 0.85 PFR28_03848 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.62 PFR28_02373 hypothetical protein low > 88
Pseudomonas fluorescens SBW25 0.85 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 PFLU_RS17005 tRNA hydroxylase low > 109
Pseudomonas simiae WCS417 0.85 PS417_24625 (dimethylallyl)adenosine tRNA methylthiotransferase 0.63 PS417_14975 tRNA hydroxylase low > 88
Kangiella aquimarina DSM 16071 0.71 B158DRAFT_0099 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.47 B158DRAFT_1015 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA low > 40
Marinobacter adhaerens HP15 0.71 HP15_2466 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.54 HP15_2202 tRNA-(ms(2)io(6)a)-hydroxylase low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.69 GFF4579 tRNA-i(6)A37 methylthiotransferase 0.38 GFF942 tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-) low > 78
Klebsiella michiganensis M5al 0.69 BWI76_RS08135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.37 BWI76_RS03020 tRNA hydroxylase — —
Pantoea sp. MT58 0.68 IAI47_13945 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.37 IAI47_16820 tRNA-(ms[2]io[6]A)-hydroxylase low > 76
Shewanella amazonensis SB2B 0.68 Sama_2575 tRNA-i(6)A37 modification enzyme MiaB (RefSeq) 0.37 Sama_1218 tRNA-hydroxylase (RefSeq) low > 62
Shewanella sp. ANA-3 0.68 Shewana3_1008 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) 0.39 Shewana3_2667 tRNA hydroxylase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.68 SO1181 miaB tRNA-i(6)A37 modification enzyme MiaB (NCBI ptt file) 0.39 SO1788 miaE tRNA-(MS[2]IO[6]A)-hydroxylase (NCBI ptt file) low > 76
Enterobacter asburiae PDN3 0.68 EX28DRAFT_2310 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.36 EX28DRAFT_3463 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA low > 76
Alteromonas macleodii MIT1002 0.68 MIT1002_01480 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB 0.39 MIT1002_02520 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) low > 70
Dickeya dadantii 3937 0.67 DDA3937_RS06250 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.37 DDA3937_RS05765 tRNA-(ms[2]io[6]A)-hydroxylase low > 74
Serratia liquefaciens MT49 0.67 IAI46_06025 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.40 IAI46_02330 tRNA-(ms[2]io[6]A)-hydroxylase low > 86
Shewanella loihica PV-4 0.67 Shew_2923 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) 0.40 Shew_2514 tRNA--hydroxylase (RefSeq) low > 60
Enterobacter sp. TBS_079 0.67 MPMX20_01311 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.37 MPMX20_00558 hypothetical protein low > 85
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_04915 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.34 CSW01_09555 tRNA-(ms[2]io[6]A)-hydroxylase low > 62
Rahnella sp. WP5 0.66 EX31_RS23205 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.49 EX31_RS22630 tRNA-(ms[2]io[6]A)-hydroxylase low > 89
Acinetobacter radioresistens SK82 0.62 MPMX26_02667 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.48 MPMX26_02151 hypothetical protein low > 36
Synechococcus elongatus PCC 7942 0.37 Synpcc7942_2374 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.32 Synpcc7942_0914 tRNA-(MS(2)IO(6)A)-hydroxylase-like low > 38
Pontibacter actiniarum KMM 6156, DSM 19842 0.34 CA264_05315 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.27 CA264_05350 tRNA 2-methylthio-N6-isopentenyl adenosine(37) hydroxylase MiaE low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.31 CA265_RS21675 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.24 CA265_RS03375 tRNA hydroxylase low > 88

Not shown: 69 genomes with orthologs for Psest_0532 only; 1 genomes with orthologs for Psest_2306 only