| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 1.0 | GFF795 | | TRAP-type C4-dicarboxylate transport system, large permease component | 1.0 | GFF2000 | | Uracil permease | 0.56 | 11 |
| Variovorax sp. OAS795 | 0.86 | ABID97_RS10330 | | TRAP transporter large permease | 0.81 | ABID97_RS03010 | | solute carrier family 23 protein | low | > 91 |
| Azospirillum sp. SherDot2 | 0.70 | MPMX19_05803 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.56 | MPMX19_02961 | | Putative pyrimidine permease RutG | low | > 112 |
| Azospirillum brasilense Sp245 | 0.69 | AZOBR_RS30120 | | C4-dicarboxylate ABC transporter permease | 0.25 | AZOBR_RS31675 | | uracil transporter | low | > 97 |
| Bosea sp. OAE506 | 0.56 | ABIE41_RS07820 | | TRAP transporter large permease | 0.59 | ABIE41_RS13010 | | uracil-xanthine permease family protein | low | > 77 |
| Burkholderia phytofirmans PsJN | 0.54 | BPHYT_RS24185 | | C4-dicarboxylate ABC transporter permease | 0.69 | BPHYT_RS01995 | | pyrimidine permease | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.54 | H281DRAFT_05326 | | TRAP transporter, DctM subunit | 0.69 | H281DRAFT_02126 | | uracil-xanthine permease | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.54 | ABIE53_006500 | | tripartite ATP-independent transporter DctM subunit | 0.69 | ABIE53_000545 | | putative pyrimidine permease RutG | low | > 113 |
| Variovorax sp. SCN45 | 0.53 | GFF2920 | | TRAP-type C4-dicarboxylate transport system, large permease component | 0.86 | GFF3368 | | Pyrimidine permease | low | > 127 |
| Agrobacterium fabrum C58 | 0.51 | Atu3135 | | ABC transporter permease | 0.57 | Atu3076 | | uracil transport protein | low | > 89 |
| Enterobacter sp. TBS_079 | 0.45 | MPMX20_04347 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.68 | MPMX20_01693 | | Putative pyrimidine permease RutG | low | > 85 |
| Pectobacterium carotovorum WPP14 | 0.43 | HER17_RS19685 | | TRAP transporter large permease | 0.31 | HER17_RS15455 | | uracil permease | low | > 75 |
| Pseudomonas fluorescens FW300-N2C3 | 0.42 | AO356_23045 | | hypothetical protein | 0.26 | AO356_16560 | | uracil transporter | low | > 104 |
| Rahnella sp. WP5 | 0.42 | EX31_RS08020 | | TRAP transporter large permease | 0.64 | EX31_RS24060 | | pyrimidine utilization transport protein G | low | > 89 |
| Pseudomonas fluorescens SBW25-INTG | 0.41 | PFLU_RS19305 | | TRAP transporter large permease | 0.27 | PFLU_RS04480 | | uracil-xanthine permease | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.41 | PFLU_RS19305 | | TRAP transporter large permease | 0.27 | PFLU_RS04480 | | uracil-xanthine permease | low | > 109 |
| Pseudomonas simiae WCS417 | 0.41 | PS417_17380 | | membrane protein | 0.27 | PS417_04430 | | uracil transporter | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.41 | Pf6N2E2_485 | | TRAP-type C4-dicarboxylate transport system, large permease component | 0.27 | Pf6N2E2_5234 | | Uracil permease | low | > 103 |
| Acidovorax sp. GW101-3H11 | 0.41 | Ac3H11_3955 | | TRAP-type C4-dicarboxylate transport system, large permease component | 0.83 | Ac3H11_4891 | | Uracil permease | low | > 79 |
| Pseudomonas sp. RS175 | 0.41 | PFR28_02440 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.26 | PFR28_03642 | | Uracil permease | low | > 88 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.41 | Psyr_0898 | | TRAP dicarboxylate transporter, DctM subunit | 0.28 | Psyr_0968 | | Xanthine/uracil permease family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.41 | Psyr_0898 | | TRAP dicarboxylate transporter, DctM subunit | 0.28 | Psyr_0968 | | Xanthine/uracil permease family | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.41 | Psest_0361 | | TRAP transporter, DctM subunit | 0.28 | Psest_1119 | | uracil-xanthine permease | low | > 67 |
| Pantoea sp. MT58 | 0.41 | IAI47_03220 | | TRAP transporter large permease | 0.66 | IAI47_12535 | | pyrimidine utilization transport protein G | low | > 76 |
| Pseudomonas putida KT2440 | 0.40 | PP_1167 | | D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) | 0.27 | PP_0745 | | putative uracil permease | low | > 96 |
| Klebsiella michiganensis M5al | 0.36 | BWI76_RS24135 | | c4-dicarboxylate permease | 0.69 | BWI76_RS10750 | | pyrimidine utilization transport protein G | low | > 92 |
| Escherichia coli ECOR27 | 0.36 | NOLOHH_11090 | dctQ | Tripartite ATP-independent periplasmic transporter, DctM component | 0.69 | NOLOHH_21545 | rutG | pyrimidine utilization transport protein G | low | > 57 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.33 | OHPLBJKB_03837 | | C4-dicarboxylate TRAP transporter large permease protein DctM | 0.70 | OHPLBJKB_02660 | | Putative pyrimidine permease RutG | low | > 73 |
| Escherichia coli Nissle 1917 | 0.33 | ECOLIN_RS17390 | | TRAP transporter large permease subunit | 0.70 | ECOLIN_RS26455 | | pyrimidine utilization transport protein G | — | — |
| Escherichia coli ECRC62 | 0.33 | BNILDI_07135 | | TRAP transporter large permease | 0.69 | BNILDI_19710 | rutG | pyrimidine utilization transport protein G | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.33 | GFF2273 | | Predicted rhamnogalacturonide-specific TRAP-type transporter, large transmembrane component RhiC | 0.31 | GFF2172 | | Uracil permease | low | > 78 |
| Castellaniella sp019104865 MT123 | 0.31 | ABCV34_RS12260 | | TRAP transporter large permease | 0.64 | ABCV34_RS15535 | | solute carrier family 23 protein | low | > 48 |
| Escherichia coli ECOR38 | 0.29 | HEPCGN_01270 | | C4-dicarboxylate ABC transporter | 0.70 | HEPCGN_23495 | rutG | pyrimidine utilization transport protein G | low | > 85 |
| Shewanella sp. ANA-3 | 0.27 | Shewana3_1414 | | TRAP dicarboxylate transporter, DctM subunit (RefSeq) | 0.23 | Shewana3_1641 | | uracil-xanthine permease (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.25 | Shew_1444 | | dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component (from data) | 0.23 | Shew_1836 | | uracil-xanthine permease (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.24 | Sama_2211 | | alpha-ketoglutarate TRAP transporter, large permease component (from data) | 0.23 | Sama_1918 | | uracil-xanthine permease (RefSeq) | low | > 62 |
Not shown: 11 genomes with orthologs for GFF795 only; 33 genomes with orthologs for GFF2000 only