Conservation of cofitness between ECD_02634 and ECD_03314 in Escherichia coli BL21

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02634 putative D-glucarate transporter 1.0 ECD_03314 16S rRNA m(2)G966 methyltransferase, SAM-dependent 0.49 5
Escherichia fergusonii Becca 1.00 EFB2_01128 putative glucarate transporter 0.99 EFB2_00351 Ribosomal RNA small subunit methyltransferase D low > 86
Escherichia coli ECOR27 1.00 NOLOHH_12100 gudP galactarate/glucarate/glycerate transporter GudP 0.99 NOLOHH_08500 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00942 putative glucarate transporter 0.98 OHPLBJKB_00238 Ribosomal RNA small subunit methyltransferase D low > 73
Escherichia coli ECRC62 1.00 BNILDI_10605 gudP galactarate/glucarate/glycerate transporter GudP 0.99 BNILDI_03015 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 75
Escherichia coli ECOR38 1.00 HEPCGN_19475 gudP galactarate/glucarate/glycerate transporter GudP 0.99 HEPCGN_15525 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 87
Escherichia coli Nissle 1917 1.00 ECOLIN_RS15540 galactarate/glucarate/glycerate transporter GudP 0.99 ECOLIN_RS19815 16S rRNA (guanine(966)-N(2))-methyltransferase low > 55
Escherichia coli BW25113 1.00 b2789 gudP predicted D-glucarate transporter (NCBI) 0.99 b3465 yhhF predicted methyltransferase (NCBI) low > 76
Escherichia coli ECRC102 1.00 NIAGMN_17990 gudP galactarate/glucarate/glycerate transporter GudP 0.99 NIAGMN_14465 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase — —
Escherichia coli ECRC101 1.00 MCAODC_10745 gudP galactarate/glucarate/glycerate transporter GudP 0.99 MCAODC_07225 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 87
Escherichia coli ECRC98 1.00 JDDGAC_23885 gudP galactarate/glucarate/glycerate transporter GudP 0.99 JDDGAC_20325 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 86
Escherichia coli ECRC100 1.00 OKFHMN_20220 gudP galactarate/glucarate/glycerate transporter GudP 0.99 OKFHMN_16695 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 80
Escherichia coli ECRC99 1.00 KEDOAH_07910 gudP galactarate/glucarate/glycerate transporter GudP 0.99 KEDOAH_11445 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase — —
Klebsiella michiganensis M5al 0.98 BWI76_RS22835 MFS transporter 0.81 BWI76_RS26405 16S rRNA (guanine(966)-N(2))-methyltransferase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.96 GFF4843 D-glucarate permease 0.83 GFF540 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) low > 78
Enterobacter asburiae PDN3 0.94 EX28DRAFT_2870 D-galactonate transporter 0.80 EX28DRAFT_4299 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 76
Enterobacter sp. TBS_079 0.93 MPMX20_03659 putative glucarate transporter 0.80 MPMX20_04342 Ribosomal RNA small subunit methyltransferase D low > 85
Rahnella sp. WP5 0.87 EX31_RS03160 MFS transporter 0.70 EX31_RS14835 16S rRNA (guanine(966)-N(2))-methyltransferase low > 89
Erwinia tracheiphila SCR3 0.85 LU632_RS06310 MFS transporter 0.71 LU632_RS19285 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 74
Pectobacterium carotovorum WPP14 0.84 HER17_RS04075 MFS transporter 0.71 HER17_RS00465 16S rRNA (guanine(966)-N(2))-methyltransferase low > 75
Pantoea sp. MT58 0.83 IAI47_04080 MFS transporter 0.67 IAI47_01535 16S rRNA (guanine(966)-N(2))-methyltransferase low > 76
Dickeya dadantii 3937 0.83 DDA3937_RS17055 MFS transporter 0.66 DDA3937_RS00630 16S rRNA (guanine(966)-N(2))-methyltransferase low > 74
Dickeya dianthicola ME23 0.82 DZA65_RS18185 MFS transporter 0.65 DZA65_RS21770 16S rRNA (guanine(966)-N(2))-methyltransferase low > 75
Dickeya dianthicola 67-19 0.82 HGI48_RS17110 MFS transporter 0.65 HGI48_RS20760 16S rRNA (guanine(966)-N(2))-methyltransferase low > 71
Pseudomonas putida KT2440 0.69 PP_3600 glucarate transporter 0.43 PP_5114 putative adenine methyltransferase low > 96
Pseudomonas fluorescens SBW25 0.69 PFLU_RS04245 MFS transporter 0.44 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 109
Pseudomonas fluorescens SBW25-INTG 0.69 PFLU_RS04245 MFS transporter 0.44 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 109
Pseudomonas sp. RS175 0.69 PFR28_00144 putative glucarate transporter 0.48 PFR28_04262 Ribosomal RNA small subunit methyltransferase D low > 88
Pseudomonas fluorescens FW300-N2E2 0.69 Pf6N2E2_3297 D-galactarate permease 0.47 Pf6N2E2_4579 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) low > 103
Pseudomonas fluorescens FW300-N2E3 0.69 AO353_05295 glucarate transporter 0.45 AO353_08265 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 101
Pseudomonas fluorescens FW300-N2C3 0.68 AO356_07175 glucarate transporter 0.47 AO356_13320 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 104
Pseudomonas simiae WCS417 0.68 PS417_04205 D-galacturonate transporter (MFS superfamily) (from data) 0.45 PS417_26825 16S rRNA methyltransferase — —
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_5043 D-galactarate permease 0.47 PfGW456L13_990 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) low > 87
Ralstonia sp. UNC404CL21Col 0.68 ABZR87_RS20330 MFS transporter 0.29 ABZR87_RS06960 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 80
Pseudomonas fluorescens FW300-N1B4 0.67 Pf1N1B4_1108 D-galactarate permease 0.45 Pf1N1B4_2320 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) — —
Herbaspirillum seropedicae SmR1 0.67 HSERO_RS15805 glucarate transporter 0.31 HSERO_RS20695 methyltransferase low > 78
Pseudomonas syringae pv. syringae B728a 0.67 Psyr_4226 D-galactonate transporter 0.47 Psyr_4754 16S rRNA m(2)G-966 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.67 Psyr_4226 D-galactonate transporter 0.47 Psyr_4754 16S rRNA m(2)G-966 methyltransferase low > 86
Ralstonia solanacearum GMI1000 0.67 RS_RS21080 MFS transporter 0.29 RS_RS01920 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 80
Ralstonia solanacearum PSI07 0.67 RPSI07_RS03475 MFS transporter 0.29 RPSI07_RS22230 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 81
Ralstonia solanacearum IBSBF1503 0.66 RALBFv3_RS19740 MFS transporter 0.30 RALBFv3_RS11070 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 76
Ralstonia solanacearum UW163 0.66 UW163_RS19435 MFS transporter 0.30 UW163_RS02510 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD — —
Cupriavidus basilensis FW507-4G11 0.66 RR42_RS29085 glucarate transporter 0.29 RR42_RS01990 methyltransferase low > 128
Azospirillum sp. SherDot2 0.65 MPMX19_02893 putative glucarate transporter 0.23 MPMX19_01626 Ribosomal RNA small subunit methyltransferase D — —
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS31870 MFS transporter 0.31 QEN71_RS01665 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 153
Paraburkholderia graminis OAS925 0.64 ABIE53_006507 ACS family glucarate transporter-like MFS transporter 0.30 ABIE53_000701 16S rRNA (guanine966-N2)-methyltransferase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.64 H281DRAFT_05318 MFS transporter, ACS family, glucarate transporter 0.31 H281DRAFT_01968 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 103
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS24150 glucarate transporter 0.30 BPHYT_RS02815 methyltransferase low > 109
Serratia liquefaciens MT49 0.35 IAI46_16925 MFS transporter 0.69 IAI46_00920 16S rRNA (guanine(966)-N(2))-methyltransferase low > 86

Not shown: 2 genomes with orthologs for ECD_02634 only; 37 genomes with orthologs for ECD_03314 only