Conservation of cofitness between ECD_00218 and ECD_03088 in Escherichia coli BL21

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00218 type 2 glutamine amidotransferase family protein 1.0 ECD_03088 ClpXP protease specificity enhancing factor 0.40 50
Escherichia coli BW25113 0.99 b0223 yafJ predicted amidotransfease (NCBI) 1.00 b3228 sspB ClpXP protease specificity-enhancing factor (NCBI) low > 76
Escherichia coli ECRC62 0.99 BNILDI_00335 yafJ Putative glutamine amidotransferase YafJ 1.00 BNILDI_01900 sspB ClpXP protease specificity-enhancing factor low > 75
Escherichia coli ECOR38 0.99 HEPCGN_07875 yafJ Putative glutamine amidotransferase YafJ 0.99 HEPCGN_16710 sspB ClpXP protease specificity-enhancing factor low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_03416 Putative glutamine amidotransferase YafJ 1.00 OHPLBJKB_00476 Stringent starvation protein B low > 73
Escherichia coli ECOR27 0.99 NOLOHH_02140 yafJ Putative glutamine amidotransferase YafJ 1.00 NOLOHH_09635 sspB ClpXP protease specificity-enhancing factor low > 75
Escherichia fergusonii Becca 0.99 EFB2_03794 Putative glutamine amidotransferase YafJ 0.99 EFB2_00602 Stringent starvation protein B low > 86
Escherichia coli ECRC98 0.99 JDDGAC_13395 yafJ class II glutamine amidotransferase 1.00 JDDGAC_21460 sspB ClpXP protease specificity-enhancing factor 0.65 31
Escherichia coli ECRC102 0.99 NIAGMN_07630 yafJ class II glutamine amidotransferase 1.00 NIAGMN_15595 sspB ClpXP protease specificity-enhancing factor — —
Escherichia coli ECRC101 0.99 MCAODC_00290 yafJ class II glutamine amidotransferase 1.00 MCAODC_08355 sspB ClpXP protease specificity-enhancing factor low > 87
Escherichia coli ECRC100 0.99 OKFHMN_09770 yafJ class II glutamine amidotransferase 1.00 OKFHMN_17835 sspB ClpXP protease specificity-enhancing factor low > 80
Escherichia coli ECRC99 0.99 KEDOAH_18385 yafJ class II glutamine amidotransferase 1.00 KEDOAH_10315 sspB ClpXP protease specificity-enhancing factor — —
Escherichia coli Nissle 1917 0.99 ECOLIN_RS01755 class II glutamine amidotransferase 0.99 ECOLIN_RS18515 ClpXP protease specificity-enhancing factor — —
Enterobacter asburiae PDN3 0.95 EX28DRAFT_2666 Predicted glutamine amidotransferase 0.74 EX28DRAFT_3277 Stringent starvation protein B low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF4102 Predicted glutamine amidotransferase 0.72 GFF2967 ClpXP protease specificity-enhancing factor / Stringent starvation protein B low > 78
Enterobacter sp. TBS_079 0.94 MPMX20_00912 Putative glutamine amidotransferase YafJ 0.76 MPMX20_04132 Stringent starvation protein B low > 85
Klebsiella michiganensis M5al 0.89 BWI76_RS05480 class II glutamine amidotransferase 0.77 BWI76_RS25330 stringent starvation protein B — —
Erwinia tracheiphila SCR3 0.88 LU632_RS01140 class II glutamine amidotransferase 0.69 LU632_RS21325 sspB ClpXP protease specificity-enhancing factor low > 74
Serratia liquefaciens MT49 0.86 IAI46_04345 class II glutamine amidotransferase 0.72 IAI46_22360 ClpXP protease specificity-enhancing factor 0.44 23
Rahnella sp. WP5 0.86 EX31_RS21015 class II glutamine amidotransferase 0.65 EX31_RS12505 ClpXP protease specificity-enhancing factor low > 89
Pantoea sp. MT58 0.85 IAI47_15185 class II glutamine amidotransferase 0.71 IAI47_17230 ClpXP protease specificity-enhancing factor low > 76
Pectobacterium carotovorum WPP14 0.85 HER17_RS04650 class II glutamine amidotransferase 0.72 HER17_RS19930 ClpXP protease specificity-enhancing factor low > 75
Dickeya dadantii 3937 0.85 DDA3937_RS16585 class II glutamine amidotransferase 0.64 DDA3937_RS01650 ClpXP protease specificity-enhancing factor low > 74
Dickeya dianthicola ME23 0.84 DZA65_RS17745 class II glutamine amidotransferase 0.63 DZA65_RS01620 ClpXP protease specificity-enhancing factor low > 75
Dickeya dianthicola 67-19 0.83 HGI48_RS16655 class II glutamine amidotransferase 0.63 HGI48_RS01550 ClpXP protease specificity-enhancing factor low > 71
Vibrio cholerae E7946 ATCC 55056 0.73 CSW01_11360 class II glutamine amidotransferase 0.57 CSW01_03065 ClpXP protease specificity-enhancing factor low > 62
Shewanella oneidensis MR-1 0.68 SO2535 hypothetical amidotransferase (NCBI ptt file) 0.50 SO0612 sspB stringent starvation protein b (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.68 Sama_1869 amidotransferase (RefSeq) 0.49 Sama_3017 ClpXP protease specificity-enhancing factor (RefSeq) low > 62
Shewanella sp. ANA-3 0.67 Shewana3_2322 glutamine amidotransferase, class-II (RefSeq) 0.51 Shewana3_0605 ClpXP protease specificity-enhancing factor (RefSeq) low > 73
Shewanella loihica PV-4 0.67 Shew_2107 glutamine amidotransferase, class-II (RefSeq) 0.48 Shew_0574 ClpXP protease specificity-enhancing factor (RefSeq) — —
Pseudomonas sp. S08-1 0.59 OH686_05255 Putative glutamine amidotransferase YafJ 0.42 OH686_08370 Stringent starvation protein B low > 80
Pseudomonas stutzeri RCH2 0.55 Psest_1849 Predicted glutamine amidotransferase 0.43 Psest_3275 Stringent starvation protein B low > 67
Marinobacter adhaerens HP15 0.55 HP15_3871 glutamine amidotransferase class-II 0.40 HP15_549 stringent starvation protein B low > 73
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS24040 glutamine amidotransferase 0.37 HSERO_RS20225 starvation protein B — —
Paraburkholderia bryophila 376MFSha3.1 0.51 H281DRAFT_04266 glutamine amidotransferase 0.32 H281DRAFT_05673 stringent starvation protein B low > 103
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS02595 glutamine amidotransferase 0.34 RR42_RS18805 peptidase low > 128
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS07540 class II glutamine amidotransferase 0.34 ABZR87_RS02365 ClpXP protease specificity-enhancing factor low > 80
Ralstonia solanacearum PSI07 0.50 RPSI07_RS21635 class II glutamine amidotransferase 0.31 RPSI07_RS10525 ClpXP protease specificity-enhancing factor low > 81
Ralstonia solanacearum UW163 0.50 UW163_RS02010 class II glutamine amidotransferase 0.32 UW163_RS06905 ClpXP protease specificity-enhancing factor — —
Ralstonia solanacearum GMI1000 0.50 RS_RS02405 class II glutamine amidotransferase 0.32 RS_RS14655 ClpXP protease specificity-enhancing factor low > 80
Ralstonia solanacearum IBSBF1503 0.50 RALBFv3_RS11575 class II glutamine amidotransferase 0.32 RALBFv3_RS06710 ClpXP protease specificity-enhancing factor low > 76
Variovorax sp. SCN45 0.49 GFF6320 Putative glutamine amidotransferase YafJ 0.37 GFF6698 ClpXP protease specificity-enhancing factor SspB low > 127
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS16680 glutamine amidotransferase 0.32 BPHYT_RS17610 peptidase — —

Not shown: 24 genomes with orthologs for ECD_00218 only; 5 genomes with orthologs for ECD_03088 only