Conservation of cofitness between ECD_02883 and ECD_02768 in Escherichia coli BL21

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02883 transcriptional activator of yqhD 1.0 ECD_02768 biosynthetic arginine decarboxylase, PLP-binding 0.62 36
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00691 HTH-type transcriptional activator RhaS 1.00 OHPLBJKB_00778 Biosynthetic arginine decarboxylase low > 73
Escherichia coli ECOR38 1.00 HEPCGN_17815 yqhC DNA-binding transcriptional regulator YqhC 1.00 HEPCGN_18610 speA biosynthetic arginine decarboxylase low > 87
Escherichia coli ECRC100 1.00 OKFHMN_18950 yqhC DNA-binding transcriptional regulator YqhC 1.00 OKFHMN_19305 speA biosynthetic arginine decarboxylase low > 80
Escherichia coli ECRC101 1.00 MCAODC_09465 yqhC DNA-binding transcriptional regulator YqhC 1.00 MCAODC_09825 speA biosynthetic arginine decarboxylase low > 87
Escherichia coli ECRC98 1.00 JDDGAC_22585 yqhC DNA-binding transcriptional regulator YqhC 1.00 JDDGAC_22935 speA biosynthetic arginine decarboxylase low > 86
Escherichia coli ECRC99 1.00 KEDOAH_09195 yqhC DNA-binding transcriptional regulator YqhC 1.00 KEDOAH_08835 speA biosynthetic arginine decarboxylase — —
Escherichia coli ECRC102 1.00 NIAGMN_16715 yqhC DNA-binding transcriptional regulator YqhC 1.00 NIAGMN_17070 speA biosynthetic arginine decarboxylase — —
Escherichia coli ECRC62 1.00 BNILDI_00790 yqhC DNA-binding transcriptional regulator YqhC 1.00 BNILDI_09755 speA biosynthetic arginine decarboxylase low > 75
Escherichia coli BW25113 1.00 b3010 yqhC putative ARAC-type regulatory protein (VIMSS) 1.00 b2938 speA arginine decarboxylase (NCBI) low > 76
Escherichia coli ECOR27 0.99 NOLOHH_10725 yqhC DNA-binding transcriptional regulator YqhC 1.00 NOLOHH_11175 speA biosynthetic arginine decarboxylase low > 75
Escherichia fergusonii Becca 0.99 EFB2_00800 HTH-type transcriptional activator RhaS 1.00 EFB2_00962 Biosynthetic arginine decarboxylase low > 86
Escherichia coli Nissle 1917 0.93 ECOLIN_RS17325 DNA-binding transcriptional regulator YqhC 1.00 ECOLIN_RS16350 biosynthetic arginine decarboxylase low > 55
Klebsiella michiganensis M5al 0.83 BWI76_RS24295 AraC family transcriptional regulator 0.95 BWI76_RS24030 arginine decarboxylase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.79 GFF3122 Transcriptional regulator, AraC family 0.94 GFF3040 Biosynthetic arginine decarboxylase (EC 4.1.1.19) low > 78
Enterobacter asburiae PDN3 0.77 EX28DRAFT_3048 AraC-type DNA-binding domain-containing proteins 0.95 EX28DRAFT_2978 arginine decarboxylase (EC 4.1.1.19) low > 76
Enterobacter sp. TBS_079 0.75 MPMX20_03854 HTH-type transcriptional activator RhaS 0.95 MPMX20_03799 Biosynthetic arginine decarboxylase low > 85
Pantoea sp. MT58 0.61 IAI47_03205 AraC family transcriptional regulator 0.87 IAI47_03660 biosynthetic arginine decarboxylase low > 76
Rahnella sp. WP5 0.56 EX31_RS08035 AraC family transcriptional regulator 0.87 EX31_RS21355 biosynthetic arginine decarboxylase low > 89
Serratia liquefaciens MT49 0.55 IAI46_21745 AraC family transcriptional regulator 0.88 IAI46_21140 biosynthetic arginine decarboxylase low > 86
Dickeya dianthicola ME23 0.54 DZA65_RS01775 AraC family transcriptional regulator 0.87 DZA65_RS19595 biosynthetic arginine decarboxylase low > 75
Dickeya dianthicola 67-19 0.53 HGI48_RS01700 AraC family transcriptional regulator 0.87 HGI48_RS18460 biosynthetic arginine decarboxylase low > 71
Dickeya dadantii 3937 0.53 DDA3937_RS01805 AraC family transcriptional regulator 0.88 DDA3937_RS18535 biosynthetic arginine decarboxylase low > 74
Pectobacterium carotovorum WPP14 0.51 HER17_RS19700 AraC family transcriptional regulator 0.86 HER17_RS02665 biosynthetic arginine decarboxylase low > 75
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_07615 AraC family transcriptional regulator 0.39 AO356_08155 arginine decarboxylase low > 104
Pseudomonas fluorescens FW300-N2E2 0.37 Pf6N2E2_3409 Hypothetical transcriptional regulator YqhC 0.40 Pf6N2E2_3504 Biosynthetic arginine decarboxylase (EC 4.1.1.19) low > 103
Pseudomonas sp. RS175 0.37 PFR28_00040 HTH-type transcriptional activator RhaS 0.40 PFR28_05228 Biosynthetic arginine decarboxylase low > 88
Pseudomonas putida KT2440 0.34 PP_2425 putative transcriptional regulator, AraC family 0.40 PP_0567 Biosynthetic arginine decarboxylase 0.18 12
Pseudomonas simiae WCS417 0.34 PS417_13365 AraC family transcriptional regulator 0.39 PS417_03005 arginine decarboxylase low > 88
Pseudomonas fluorescens FW300-N2E3 0.32 AO353_01245 AraC family transcriptional regulator 0.39 AO353_13720 arginine decarboxylase low > 101
Desulfovibrio vulgaris Miyazaki F 0.32 DvMF_0530 transcriptional regulator, AraC family (RefSeq) 0.33 DvMF_1536 arginine decarboxylase (RefSeq) low > 51
Shewanella loihica PV-4 0.32 Shew_0071 AraC family transcriptional regulator (RefSeq) 0.53 Shew_1619 arginine decarboxylase (RefSeq) — —
Pseudomonas fluorescens SBW25 0.32 PFLU_RS22930 AraC family transcriptional regulator 0.39 PFLU_RS03080 arginine decarboxylase 0.50 13
Pseudomonas fluorescens SBW25-INTG 0.32 PFLU_RS22930 AraC family transcriptional regulator 0.39 PFLU_RS03080 arginine decarboxylase low > 109
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_2133 Transcriptional regulator, AraC family 0.39 PfGW456L13_43 Biosynthetic arginine decarboxylase (EC 4.1.1.19) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.31 Psyr_1993 transcriptional regulator, AraC family 0.40 Psyr_4381 arginine decarboxylase low > 86
Pseudomonas syringae pv. syringae B728a 0.31 Psyr_1993 transcriptional regulator, AraC family 0.40 Psyr_4381 arginine decarboxylase low > 86
Pseudomonas fluorescens FW300-N1B4 0.30 Pf1N1B4_394 Transcriptional regulator, AraC family 0.39 Pf1N1B4_1296 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) low > 87
Lysobacter sp. OAE881 0.29 ABIE51_RS08850 AraC family transcriptional regulator 0.42 ABIE51_RS00125 arginine decarboxylase — —
Pseudomonas sp. S08-1 0.24 OH686_18355 Transcriptional regulator, AraC family 0.40 OH686_07545 arginine decarboxylase low > 80
Pseudomonas stutzeri RCH2 0.23 Psest_1393 AraC-type DNA-binding domain-containing proteins 0.40 Psest_3366 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) low > 67
Dyella japonica UNC79MFTsu3.2 0.22 ABZR86_RS07015 AraC family transcriptional regulator 0.41 ABZR86_RS15580 biosynthetic arginine decarboxylase — —
Shewanella sp. ANA-3 0.22 Shewana3_1698 AraC family transcriptional regulator (RefSeq) 0.54 Shewana3_1624 arginine decarboxylase (RefSeq) low > 73
Xanthomonas campestris pv. campestris strain 8004 0.22 Xcc-8004.1800.1 hypothetical protein 0.43 Xcc-8004.4909.1 Biosynthetic arginine decarboxylase (EC 4.1.1.19) — —
Shewanella amazonensis SB2B 0.22 Sama_2712 AraC family transcriptional regulator (RefSeq) 0.53 Sama_1963 arginine decarboxylase (RefSeq) low > 62

Not shown: 11 genomes with orthologs for ECD_02883 only; 17 genomes with orthologs for ECD_02768 only