Conservation of cofitness between ECD_03500 and ECD_02657 in Escherichia coli BL21

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03500 ribonuclease PH 1.0 ECD_02657 23S rRNA C2498 2'-O-ribose methyltransferase, SAM-dependent 0.51 13
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00059 Ribonuclease PH 1.00 OHPLBJKB_00925 Ribosomal RNA large subunit methyltransferase M low > 73
Escherichia coli ECRC62 1.00 BNILDI_04045 rph ribonuclease PH 1.00 BNILDI_10515 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 75
Escherichia coli ECRC101 1.00 MCAODC_06100 rph ribonuclease PH 1.00 MCAODC_10655 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 87
Escherichia coli ECRC99 1.00 KEDOAH_12555 rph ribonuclease PH 1.00 KEDOAH_08000 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM — —
Escherichia fergusonii Becca 1.00 EFB2_00170 Ribonuclease PH 1.00 EFB2_01111 Ribosomal RNA large subunit methyltransferase M low > 86
Escherichia coli Nissle 1917 1.00 ECOLIN_RS20755 ribonuclease PH 1.00 ECOLIN_RS15640 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 55
Escherichia coli ECRC98 1.00 JDDGAC_19215 rph ribonuclease PH 1.00 JDDGAC_23795 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 86
Escherichia coli ECRC100 1.00 OKFHMN_15590 rph ribonuclease PH 1.00 OKFHMN_20130 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 80
Escherichia coli ECRC102 1.00 NIAGMN_13350 rph ribonuclease PH 1.00 NIAGMN_17900 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM — —
Escherichia coli ECOR27 1.00 NOLOHH_07470 rph ribonuclease PH 1.00 NOLOHH_12010 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 75
Escherichia coli ECOR38 1.00 HEPCGN_14410 rph ribonuclease PH 1.00 HEPCGN_19385 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 87
Escherichia coli BW25113 0.93 b3643 rph ribonuclease PH (NCBI) 1.00 b2806 ygdE predicted methyltransferase (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF366 Ribonuclease PH (EC 2.7.7.56) 0.96 GFF4863 'LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM' transl_table=11 low > 78
Klebsiella michiganensis M5al 0.92 BWI76_RS27390 ribonuclease PH 0.93 BWI76_RS22945 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 92
Enterobacter sp. TBS_079 0.92 MPMX20_00092 Ribonuclease PH 0.93 MPMX20_03669 Ribosomal RNA large subunit methyltransferase M low > 85
Enterobacter asburiae PDN3 0.91 EX28DRAFT_3893 ribonuclease PH 0.92 EX28DRAFT_2881 Predicted SAM-dependent methyltransferase low > 76
Dickeya dadantii 3937 0.89 DDA3937_RS20540 ribonuclease PH 0.77 DDA3937_RS05060 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM 0.62 54
Dickeya dianthicola ME23 0.88 DZA65_RS00730 ribonuclease PH 0.78 DZA65_RS05400 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 75
Dickeya dianthicola 67-19 0.88 HGI48_RS00675 ribonuclease PH 0.78 HGI48_RS05060 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 71
Serratia liquefaciens MT49 0.87 IAI46_24850 ribonuclease PH 0.79 IAI46_20330 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 86
Pantoea sp. MT58 0.87 IAI47_00595 ribonuclease PH 0.81 IAI47_04035 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 76
Erwinia tracheiphila SCR3 0.86 LU632_RS22020 rph ribonuclease PH 0.78 LU632_RS06265 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 74
Pectobacterium carotovorum WPP14 0.85 HER17_RS20855 ribonuclease PH 0.79 HER17_RS16405 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 75
Rahnella sp. WP5 0.85 EX31_RS14505 ribonuclease PH 0.79 EX31_RS13100 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 89
Shewanella amazonensis SB2B 0.77 Sama_0320 tRNA nucleotidyltransferase (RefSeq) 0.58 Sama_2426 putative RNA 2'-O-ribose methyltransferase (RefSeq) low > 62
Shewanella loihica PV-4 0.77 Shew_3488 ribonuclease PH (RefSeq) 0.57 Shew_2761 putative RNA 2'-O-ribose methyltransferase (RefSeq) low > 60
Shewanella oneidensis MR-1 0.76 SO4256 rph ribonuclease PH (NCBI ptt file) 0.58 SO1536 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.76 Shewana3_3777 RNAse PH (RefSeq) 0.59 Shewana3_2891 putative RNA 2'-O-ribose methyltransferase (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.75 MIT1002_04071 Ribonuclease PH 0.40 MIT1002_01523 Ribosomal RNA large subunit methyltransferase M low > 70
Pseudomonas sp. S08-1 0.71 OH686_13570 ribonuclease PH 0.45 OH686_02095 23S rRNA (cytidine(2498)-2'-O)-methyltransferase low > 80
Kangiella aquimarina DSM 16071 0.70 B158DRAFT_0588 ribonuclease PH 0.38 B158DRAFT_2158 Predicted SAM-dependent methyltransferase low > 40
Marinobacter adhaerens HP15 0.70 HP15_300 ribonuclease PH 0.37 HP15_2104 putative RNA 2'-O-ribose methyltransferase low > 73
Pseudomonas stutzeri RCH2 0.70 Psest_3813 ribonuclease PH 0.44 Psest_2520 Predicted SAM-dependent methyltransferase low > 67
Pseudomonas syringae pv. syringae B728a 0.69 Psyr_0213 RNAse PH 0.45 Psyr_3403 conserved hypothetical protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.69 Psyr_0213 RNAse PH 0.45 Psyr_3403 conserved hypothetical protein low > 86
Pseudomonas fluorescens FW300-N1B4 0.69 Pf1N1B4_2117 Ribonuclease PH (EC 2.7.7.56) 0.43 Pf1N1B4_3890 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM — —
Pseudomonas fluorescens FW300-N2E2 0.69 Pf6N2E2_4365 Ribonuclease PH (EC 2.7.7.56) 0.44 Pf6N2E2_2300 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM low > 103
Pseudomonas putida KT2440 0.69 PP_5294 Ribonuclease PH 0.44 PP_2113 Ribosomal RNA large subunit methyltransferase M low > 96
Pseudomonas fluorescens FW300-N2C3 0.69 AO356_12500 ribonuclease PH 0.44 AO356_02380 23S rRNA methyltransferase low > 104
Pseudomonas fluorescens GW456-L13 0.69 PfGW456L13_784 Ribonuclease PH (EC 2.7.7.56) 0.42 PfGW456L13_4051 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM low > 87
Pseudomonas fluorescens FW300-N2E3 0.69 AO353_09260 ribonuclease PH 0.42 AO353_00560 23S rRNA methyltransferase low > 101
Pseudomonas sp. RS175 0.68 PFR28_04420 Ribonuclease PH 0.43 PFR28_01100 Ribosomal RNA large subunit methyltransferase M low > 88
Pseudomonas fluorescens SBW25-INTG 0.68 PFLU_RS29490 ribonuclease PH 0.44 PFLU_RS07600 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 109
Pseudomonas fluorescens SBW25 0.68 PFLU_RS29490 ribonuclease PH 0.44 PFLU_RS07600 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 109
Pseudomonas simiae WCS417 0.68 PS417_27810 ribonuclease PH 0.44 PS417_07520 23S rRNA methyltransferase — —
Xanthomonas campestris pv. campestris strain 8004 0.67 Xcc-8004.1221.1 Ribonuclease PH (EC 2.7.7.56) 0.37 Xcc-8004.4242.1 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM low > 74
Lysobacter sp. OAE881 0.63 ABIE51_RS17285 ribonuclease PH 0.37 ABIE51_RS05440 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 62

Not shown: 41 genomes with orthologs for ECD_03500 only; 0 genomes with orthologs for ECD_02657 only