Conservation of cofitness between ECD_02776 and ECD_02559 in Escherichia coli BL21

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02776 16S rRNA m(3)U1498 methyltransferase, SAM-dependent 1.0 ECD_02559 anaerobic nitric oxide reductase DNA-binding transcriptional activator 0.73 13
Escherichia coli ECOR38 1.00 HEPCGN_18585 Ribosomal RNA small subunit methyltransferase E 0.98 HEPCGN_19850 norR nitric oxide reductase transcriptional regulator NorR low > 87
Escherichia fergusonii Becca 1.00 EFB2_00956 Ribosomal RNA small subunit methyltransferase E 0.98 EFB2_01215 Anaerobic nitric oxide reductase transcription regulator NorR low > 86
Escherichia coli ECRC101 1.00 MCAODC_09800 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.99 MCAODC_11175 norR nitric oxide reductase transcriptional regulator NorR low > 87
Escherichia coli ECRC100 1.00 OKFHMN_19280 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.99 OKFHMN_20650 norR nitric oxide reductase transcriptional regulator NorR low > 80
Escherichia coli BW25113 1.00 b2946 yggJ orf, hypothetical protein (VIMSS) 1.00 b2709 ygaA putative 2-component transcriptional regulator (VIMSS) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00772 Ribosomal RNA small subunit methyltransferase E 0.98 OHPLBJKB_01025 Anaerobic nitric oxide reductase transcription regulator NorR 0.37 58
Escherichia coli ECRC98 1.00 JDDGAC_22910 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.99 JDDGAC_24315 norR nitric oxide reductase transcriptional regulator NorR low > 86
Escherichia coli ECRC102 1.00 NIAGMN_17045 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.99 NIAGMN_18420 norR nitric oxide reductase transcriptional regulator NorR — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS16390 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.99 ECOLIN_RS26155 nitric oxide reductase transcriptional regulator NorR — —
Escherichia coli ECRC99 1.00 KEDOAH_08860 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.99 KEDOAH_07485 norR nitric oxide reductase transcriptional regulator NorR — —
Escherichia coli ECOR27 1.00 NOLOHH_11150 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.99 NOLOHH_12495 norR nitric oxide reductase transcriptional regulator NorR low > 75
Escherichia coli ECRC62 1.00 BNILDI_09730 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.98 BNILDI_11055 norR nitric oxide reductase transcriptional regulator NorR low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF3048 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.84 GFF4703 Anaerobic nitric oxide reductase transcription regulator NorR low > 78
Enterobacter asburiae PDN3 0.89 EX28DRAFT_2984 RNA methyltransferase, RsmE family 0.82 EX28DRAFT_2798 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains low > 76
Enterobacter sp. TBS_079 0.89 MPMX20_03804 Ribosomal RNA small subunit methyltransferase E 0.82 MPMX20_03593 Anaerobic nitric oxide reductase transcription regulator NorR low > 85
Klebsiella michiganensis M5al 0.86 BWI76_RS24070 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.78 BWI76_RS22250 nitric oxide reductase transcription regulator low > 92
Dickeya dadantii 3937 0.81 DDA3937_RS18555 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.66 DDA3937_RS04535 nitric oxide reductase transcriptional regulator NorR low > 74
Dickeya dianthicola 67-19 0.79 HGI48_RS18490 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.66 HGI48_RS04495 nitric oxide reductase transcriptional regulator NorR low > 71
Dickeya dianthicola ME23 0.79 DZA65_RS19625 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.66 DZA65_RS04415 nitric oxide reductase transcriptional regulator NorR low > 75
Pectobacterium carotovorum WPP14 0.78 HER17_RS02640 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.66 HER17_RS17125 nitric oxide reductase transcriptional regulator NorR low > 75
Shewanella sp. ANA-3 0.68 Shewana3_3444 16S ribosomal RNA methyltransferase RsmE (RefSeq) 0.60 Shewana3_0845 anaerobic nitric oxide reductase transcription regulator (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.68 CSW01_02495 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.45 CSW01_14900 regulatory protein LuxO low > 62
Shewanella amazonensis SB2B 0.66 Sama_0575 16S ribosomal RNA methyltransferase RsmE (RefSeq) 0.58 Sama_0727 anaerobic nitric oxide reductase transcription regulator (RefSeq) low > 62
Shewanella loihica PV-4 0.65 Shew_3224 hypothetical protein (RefSeq) 0.62 Shew_0656 anaerobic nitric oxide reductase transcription regulator (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.45 MIT1002_03054 Ribosomal RNA small subunit methyltransferase E 0.41 MIT1002_03245 Regulatory protein LuxO low > 70
Pseudomonas fluorescens FW300-N2E3 0.42 AO353_08050 16S rRNA methyltransferase 0.47 AO353_15435 transcriptional regulator low > 101
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.46 PFLU_RS25235 nitric oxide reductase transcriptional regulator NorR low > 109
Pseudomonas sp. RS175 0.42 PFR28_04209 Ribosomal RNA small subunit methyltransferase E 0.44 PFR28_00239 Nitric oxide reductase transcription regulator NorR2 low > 88
Pseudomonas fluorescens SBW25 0.42 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.46 PFLU_RS25235 nitric oxide reductase transcriptional regulator NorR low > 109
Pseudomonas putida KT2440 0.41 PP_4985 16S rRNA m3U1498 methyltransferase 0.45 PP_0807 DNA-binding transcriptional dual regulator (NO) low > 96
Pseudomonas fluorescens FW300-N2E2 0.41 Pf6N2E2_4630 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.46 Pf6N2E2_5314 Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR low > 103
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_13565 16S rRNA methyltransferase 0.45 AO356_16945 transcriptional regulator low > 104
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_1043 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.47 PfGW456L13_4939 Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR low > 87
Pseudomonas simiae WCS417 0.41 PS417_26545 16S rRNA methyltransferase 0.47 PS417_23405 transcriptional regulator low > 88
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_2376 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.47 Pf1N1B4_926 Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR — —
Pseudomonas stutzeri RCH2 0.40 Psest_0305 RNA methyltransferase, RsmE family 0.40 Psest_0833 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains low > 67
Pseudomonas sp. S08-1 0.39 OH686_10855 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.44 OH686_12120 Anaerobic nitric oxide reductase transcription regulator NorR low > 80
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS16855 16S rRNA methyltransferase 0.45 BPHYT_RS30560 transcriptional regulator low > 109
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS17590 16S rRNA methyltransferase 0.40 RR42_RS08835 transcriptional regulator low > 128
Ralstonia solanacearum GMI1000 0.33 RS_RS13825 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.42 RS_RS21740 nitric oxide reductase transcriptional regulator NorR low > 80
Paraburkholderia sabiae LMG 24235 0.33 QEN71_RS27020 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.44 QEN71_RS15700 nitric oxide reductase transcriptional regulator NorR low > 153
Acidovorax sp. GW101-3H11 0.32 Ac3H11_4323 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.43 Ac3H11_3315 Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR low > 79
Herbaspirillum seropedicae SmR1 0.29 HSERO_RS07110 16S rRNA methyltransferase 0.44 HSERO_RS12530 transcriptional regulator low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.29 GFF2462 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.42 GFF4519 Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR low > 90
Castellaniella sp019104865 MT123 0.27 ABCV34_RS15445 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.38 ABCV34_RS05900 nitric oxide reductase transcriptional regulator NorR low > 48
Azospirillum sp. SherDot2 0.18 MPMX19_00577 Ribosomal RNA small subunit methyltransferase E 0.41 MPMX19_06071 Nitric oxide reductase transcription regulator NorR2 low > 112

Not shown: 53 genomes with orthologs for ECD_02776 only; 1 genomes with orthologs for ECD_02559 only