| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_00806 | | D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a | 1.0 | ECD_01619 | | transcriptional repressor for the nemRA-gloA operon, quinone-, glyoxal-, and HOCl-activated | 0.45 | 7 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_02871 | | D-alanyl-D-alanine carboxypeptidase DacC | 1.00 | OHPLBJKB_02076 | | HTH-type transcriptional repressor NemR | low | > 73 |
| Escherichia coli BW25113 | 1.00 | b0839 | dacC | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) | 1.00 | b1649 | ydhM | predicted DNA-binding transcriptional regulator (RefSeq) | — | — |
| Escherichia coli ECRC62 | 1.00 | BNILDI_20670 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | 1.00 | BNILDI_16750 | nemR | DNA-binding transcriptional regulator NemR | low | > 75 |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_09675 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | 0.97 | JDDGAC_02030 | nemR | DNA-binding transcriptional regulator NemR | low | > 86 |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_21870 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | 0.97 | KEDOAH_00670 | nemR | DNA-binding transcriptional regulator NemR | — | — |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_01990 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | 0.98 | HEPCGN_05825 | nemR | DNA-binding transcriptional regulator NemR | low | > 87 |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_22410 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | 1.00 | NOLOHH_17960 | nemR | DNA-binding transcriptional regulator NemR | low | > 75 |
| Escherichia coli ECRC101 | 1.00 | MCAODC_25255 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | 0.98 | MCAODC_17970 | nemR | DNA-binding transcriptional regulator NemR | low | > 87 |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS04460 | | serine-type D-Ala-D-Ala carboxypeptidase | 1.00 | ECOLIN_RS09195 | | DNA-binding transcriptional regulator NemR | — | — |
| Escherichia coli ECRC100 | 1.00 | OKFHMN_06040 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | 0.97 | OKFHMN_27440 | nemR | DNA-binding transcriptional regulator NemR | low | > 80 |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_04085 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | 0.97 | NIAGMN_00625 | nemR | DNA-binding transcriptional regulator NemR | — | — |
| Escherichia fergusonii Becca | 1.00 | EFB2_03267 | | D-alanyl-D-alanine carboxypeptidase DacC | 1.00 | EFB2_02343 | | HTH-type transcriptional repressor NemR | low | > 86 |
| Enterobacter asburiae PDN3 | 0.90 | EX28DRAFT_2127 | | D-alanyl-D-alanine carboxypeptidase | 0.84 | EX28DRAFT_1647 | | transcriptional regulator, TetR family | low | > 76 |
| Enterobacter sp. TBS_079 | 0.90 | MPMX20_01477 | | D-alanyl-D-alanine carboxypeptidase DacC | 0.83 | MPMX20_01987 | | HTH-type transcriptional repressor NemR | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.86 | GFF744 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.83 | GFF3625 | | Transcriptional regulator, TetR family | low | > 78 |
| Klebsiella michiganensis M5al | 0.85 | BWI76_RS09145 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.74 | BWI76_RS16470 | | transcriptional repressor NemR | low | > 92 |
| Pantoea sp. MT58 | 0.75 | IAI47_13090 | | serine hydrolase | 0.48 | IAI47_10760 | | TetR/AcrR family transcriptional regulator | low | > 76 |
| Serratia liquefaciens MT49 | 0.71 | IAI46_08285 | | serine hydrolase | 0.47 | IAI46_11285 | | TetR/AcrR family transcriptional regulator | 0.43 | 22 |
| Rahnella sp. WP5 | 0.65 | EX31_RS09695 | | D-alanyl-D-alanine carboxypeptidase | 0.36 | EX31_RS01435 | | TetR/AcrR family transcriptional regulator | low | > 89 |
| Pseudomonas putida KT2440 | 0.42 | PP_4803 | | D-alanyl-D-alanine carboxypeptidase | 0.41 | PP_2475 | | Transcriptional regulator, TetR family | low | > 96 |
| Pseudomonas fluorescens SBW25-INTG | 0.42 | PFLU_RS26635 | | D-alanyl-D-alanine carboxypeptidase | 0.36 | PFLU_RS11765 | | TetR/AcrR family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.42 | PFLU_RS26635 | | D-alanyl-D-alanine carboxypeptidase | 0.36 | PFLU_RS11765 | | TetR/AcrR family transcriptional regulator | low | > 109 |
| Pseudomonas simiae WCS417 | 0.41 | PS417_24705 | | D-alanyl-D-alanine carboxypeptidase | 0.36 | PS417_11180 | | TetR family transcriptional regulator | low | > 88 |
| Pseudomonas stutzeri RCH2 | 0.41 | Psest_0516 | | D-alanyl-D-alanine carboxypeptidase | 0.21 | Psest_0932 | | Transcriptional regulator | low | > 67 |
| Pseudomonas sp. S08-1 | 0.41 | OH686_09300 | | D-alanyl-D-alanine carboxypeptidase | 0.24 | OH686_06240 | | Transcriptional regulator, AcrR family | low | > 80 |
| Pseudomonas syringae pv. syringae B728a | 0.41 | Psyr_4361 | | penicillin-binding protein 6, Serine peptidase, MEROPS family S11 | 0.34 | Psyr_2933 | | transcriptional regulator, TetR family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.41 | Psyr_4361 | | penicillin-binding protein 6, Serine peptidase, MEROPS family S11 | 0.34 | Psyr_2933 | | transcriptional regulator, TetR family | low | > 86 |
| Dyella japonica UNC79MFTsu3.2 | 0.40 | ABZR86_RS17490 | | D-alanyl-D-alanine carboxypeptidase family protein | 0.39 | ABZR86_RS19675 | | TetR/AcrR family transcriptional regulator | — | — |
| Marinobacter adhaerens HP15 | 0.39 | HP15_608 | | serine-type D-Ala-D-Ala carboxypeptidase | 0.21 | HP15_3141 | | transcriptional regulator, TetR family | — | — |
| Variovorax sp. SCN45 | 0.37 | GFF1728 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.23 | GFF4224 | | Transcriptional regulator, AcrR family | low | > 127 |
| Dechlorosoma suillum PS | 0.37 | Dsui_0899 | | D-alanyl-D-alanine carboxypeptidase | 0.38 | Dsui_1876 | | transcriptional regulator | low | > 51 |
| Paraburkholderia sabiae LMG 24235 | 0.36 | QEN71_RS01300 | | D-alanyl-D-alanine carboxypeptidase family protein | 0.21 | QEN71_RS20880 | | TetR/AcrR family transcriptional regulator | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.36 | BPHYT_RS02415 | | cytochrome C550 | 0.14 | BPHYT_RS20385 | | TetR family transcriptional regulator | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.35 | H281DRAFT_02054 | | penicillin-binding protein 6. Serine peptidase. MEROPS family S11 | 0.36 | H281DRAFT_01790 | | transcriptional regulator, TetR family | low | > 103 |
| Ralstonia solanacearum PSI07 | 0.35 | RPSI07_RS22545 | | D-alanyl-D-alanine carboxypeptidase | 0.35 | RPSI07_RS18170 | | TetR/AcrR family transcriptional regulator | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.35 | RS_RS01610 | | D-alanyl-D-alanine carboxypeptidase | 0.36 | RS_RS06015 | | TetR/AcrR family transcriptional regulator | low | > 80 |
| Ralstonia solanacearum UW163 | 0.34 | UW163_RS02810 | | D-alanyl-D-alanine carboxypeptidase | 0.34 | UW163_RS12675 | | TetR/AcrR family transcriptional regulator | — | — |
| Ralstonia sp. UNC404CL21Col | 0.34 | ABZR87_RS06610 | | D-alanyl-D-alanine carboxypeptidase family protein | 0.36 | ABZR87_RS10845 | | TetR/AcrR family transcriptional regulator | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.34 | RALBFv3_RS10770 | | D-alanyl-D-alanine carboxypeptidase | 0.34 | RALBFv3_RS15205 | | TetR/AcrR family transcriptional regulator | low | > 76 |
| Herbaspirillum seropedicae SmR1 | 0.34 | HSERO_RS21530 | | cytochrome C550 | 0.33 | HSERO_RS18905 | | TetR family transcriptional regulator | low | > 78 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.33 | GFF1806 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.16 | GFF2489 | | Transcriptional regulator, TetR family | low | > 90 |
| Variovorax sp. OAS795 | 0.32 | ABID97_RS00695 | | D-alanyl-D-alanine carboxypeptidase family protein | 0.23 | ABID97_RS26745 | | TetR/AcrR family transcriptional regulator | — | — |
| Rhodospirillum rubrum S1H | 0.31 | Rru_A1704 | | Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) | 0.13 | Rru_A0888 | | Transcriptional Regulator, TetR family (NCBI) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.24 | PGA1_c08020 | | D-alanyl-D-alanine carboxypeptidase DacC | 0.36 | PGA1_c30430 | | transcriptional regulator, TetR family | — | — |
Not shown: 29 genomes with orthologs for ECD_00806 only; 7 genomes with orthologs for ECD_01619 only