Conservation of cofitness between DDA3937_RS15930 and DDA3937_RS13145 in Dickeya dadantii 3937

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dadantii 3937 1.0 DDA3937_RS15930 DNA/RNA nuclease SfsA 1.0 DDA3937_RS13145 23S rRNA accumulation protein YceD 0.64 5
Dickeya dianthicola 67-19 0.97 HGI48_RS16045 DNA/RNA nuclease SfsA 0.98 HGI48_RS13210 23S rRNA accumulation protein YceD low > 71
Dickeya dianthicola ME23 0.97 DZA65_RS17130 DNA/RNA nuclease SfsA 0.97 DZA65_RS13680 23S rRNA accumulation protein YceD — —
Pectobacterium carotovorum WPP14 0.70 HER17_RS05585 DNA/RNA nuclease SfsA 0.92 HER17_RS08625 23S rRNA accumulation protein YceD low > 75
Rahnella sp. WP5 0.68 EX31_RS03245 DNA/RNA nuclease SfsA 0.84 EX31_RS24410 23S rRNA accumulation protein YceD 0.36 75
Serratia liquefaciens MT49 0.68 IAI46_21205 DNA/RNA nuclease SfsA 0.77 IAI46_09765 23S rRNA accumulation protein YceD — —
Enterobacter sp. TBS_079 0.67 MPMX20_00832 Sugar fermentation stimulation protein A 0.83 MPMX20_01768 Large ribosomal RNA subunit accumulation protein YceD low > 85
Escherichia coli ECOR27 0.66 NOLOHH_02685 sfsA DNA/RNA nuclease SfsA 0.84 NOLOHH_21130 yceD 23S rRNA accumulation protein YceD low > 75
Escherichia coli ECRC102 0.66 NIAGMN_08190 sfsA DNA/RNA nuclease SfsA 0.84 NIAGMN_24230 yceD 23S rRNA accumulation protein YceD — —
Escherichia coli ECRC99 0.66 KEDOAH_17815 sfsA DNA/RNA nuclease SfsA 0.84 KEDOAH_24155 yceD 23S rRNA accumulation protein YceD — —
Escherichia coli ECRC101 0.66 MCAODC_00855 sfsA DNA/RNA nuclease SfsA 0.84 MCAODC_22960 yceD 23S rRNA accumulation protein YceD low > 87
Escherichia coli BW25113 0.66 b0146 sfsA sugar fermentation stimulation protein A (NCBI) 0.84 b1088 yceD hypothetical protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_03516 Sugar fermentation stimulation protein A 0.84 OHPLBJKB_02578 Large ribosomal RNA subunit accumulation protein YceD low > 73
Escherichia coli ECRC100 0.66 OKFHMN_10340 sfsA DNA/RNA nuclease SfsA 0.84 OKFHMN_03600 yceD 23S rRNA accumulation protein YceD low > 80
Escherichia coli ECRC62 0.66 BNILDI_08985 sfsA DNA/RNA nuclease SfsA 0.84 BNILDI_19290 yceD 23S rRNA accumulation protein YceD low > 75
Escherichia coli ECRC98 0.66 JDDGAC_13935 sfsA DNA/RNA nuclease SfsA 0.84 JDDGAC_07260 yceD 23S rRNA accumulation protein YceD 0.56 77
Escherichia coli BL21 0.66 ECD_00145 sugar fermentation stimulation protein A 0.84 ECD_01084 DUF177 family protein 0.66 54
Escherichia coli ECOR38 0.66 HEPCGN_08290 sfsA DNA/RNA nuclease SfsA 0.84 HEPCGN_23880 yceD 23S rRNA accumulation protein YceD low > 87
Klebsiella michiganensis M5al 0.66 BWI76_RS05020 sugar fermentation stimulation protein SfsA 0.77 BWI76_RS11065 hypothetical protein — —
Escherichia coli Nissle 1917 0.65 ECOLIN_RS00820 DNA/RNA nuclease SfsA 0.84 ECOLIN_RS06290 23S rRNA accumulation protein YceD — —
Enterobacter asburiae PDN3 0.65 EX28DRAFT_3735 sugar fermentation stimulation protein 0.83 EX28DRAFT_1841 Predicted metal-binding, possibly nucleic acid-binding protein low > 76
Pantoea sp. MT58 0.65 IAI47_15630 DNA/RNA nuclease SfsA 0.74 IAI47_12095 23S rRNA accumulation protein YceD — —
Escherichia fergusonii Becca 0.65 EFB2_03898 Sugar fermentation stimulation protein A 0.84 EFB2_02887 Large ribosomal RNA subunit accumulation protein YceD 0.41 44
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF86 Sugar/maltose fermentation stimulation protein homolog 0.83 GFF3370 COG1399 protein, clustered with ribosomal protein L32p low > 78
Erwinia tracheiphila SCR3 0.64 LU632_RS20075 sfsA DNA/RNA nuclease SfsA 0.78 LU632_RS14845 yceD 23S rRNA accumulation protein YceD low > 74
Vibrio cholerae E7946 ATCC 55056 0.60 CSW01_03160 DNA/RNA nuclease SfsA 0.48 CSW01_10120 23S rRNA accumulation protein YceD — —
Shewanella loihica PV-4 0.57 Shew_3128 sugar fermentation stimulation protein (RefSeq) 0.43 Shew_1598 hypothetical protein (RefSeq) — —
Shewanella oneidensis MR-1 0.54 SO0875 sfsA sugar fermentation stimulation protein (NCBI ptt file) 0.43 SO2781 conserved hypothetical protein (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.54 Sama_0781 sugar fermentation stimulation protein A (RefSeq) 0.41 Sama_1985 hypothetical protein (RefSeq) — —
Shewanella sp. ANA-3 0.54 Shewana3_3403 sugar fermentation stimulation protein A (RefSeq) 0.42 Shewana3_2563 hypothetical protein (RefSeq) — —
Marinobacter adhaerens HP15 0.47 HP15_333 sugar fermentation stimulation protein-like protein 0.22 HP15_2217 protein containing DUF177 — —
Pseudomonas putida KT2440 0.45 PP_4691 sugar fermentation stimulation protein A 0.17 PP_1910 conserved protein of unknown function — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_0837 Sugar fermentation stimulation protein 0.15 Psyr_1643 Protein of unknown function DUF177 — —
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_0837 Sugar fermentation stimulation protein 0.15 Psyr_1643 Protein of unknown function DUF177 — —
Pseudomonas sp. RS175 0.44 PFR28_03712 Sugar fermentation stimulation protein A 0.21 PFR28_03014 Large ribosomal RNA subunit accumulation protein YceD — —
Pseudomonas fluorescens FW300-N2E2 0.44 Pf6N2E2_5162 Sugar/maltose fermentation stimulation protein homolog 0.15 Pf6N2E2_5948 COG1399 protein, clustered with ribosomal protein L32p — —
Dechlorosoma suillum PS 0.44 Dsui_0297 sugar fermentation stimulation protein 0.16 Dsui_2443 putative metal-binding protein, possibly nucleic-acid binding protein low > 51
Pseudomonas fluorescens SBW25 0.43 PFLU_RS25705 DNA/RNA nuclease SfsA 0.16 PFLU_RS23075 hypothetical protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS25705 DNA/RNA nuclease SfsA 0.16 PFLU_RS23075 hypothetical protein — —
Pseudomonas fluorescens FW300-N2C3 0.43 AO356_16105 XRE family transcriptional regulator 0.15 AO356_20145 metal-binding protein — —
Alteromonas macleodii MIT1002 0.43 MIT1002_03689 Sugar fermentation stimulation protein A 0.49 MIT1002_01728 hypothetical protein — —
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_2864 Sugar/maltose fermentation stimulation protein homolog 0.15 Pf1N1B4_455 COG1399 protein, clustered with ribosomal protein L32p — —
Pseudomonas stutzeri RCH2 0.42 Psest_1005 sugar fermentation stimulation protein 0.27 Psest_1684 Predicted metal-binding, possibly nucleic acid-binding protein — —
Pseudomonas simiae WCS417 0.42 PS417_23865 XRE family transcriptional regulator 0.15 PS417_21460 metal-binding protein — —
Pseudomonas fluorescens GW456-L13 0.42 PfGW456L13_1530 Sugar/maltose fermentation stimulation protein homolog 0.15 PfGW456L13_2101 COG1399 protein, clustered with ribosomal protein L32p — —
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_14430 XRE family transcriptional regulator 0.15 AO353_01385 metal-binding protein — —

Not shown: 14 genomes with orthologs for DDA3937_RS15930 only; 4 genomes with orthologs for DDA3937_RS13145 only