Conservation of cofitness between CSW01_01485 and CSW01_13810 in Vibrio cholerae E7946 ATCC 55056

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01485 transcriptional regulator 1.0 CSW01_13810 phosphoenolpyruvate carboxykinase (ATP) 0.97 3
Erwinia amylovora T8 0.56 OLJFJH_04280 gluconate operon transcriptional repressor GntR 0.78 OLJFJH_04150 phosphoenolpyruvate carboxykinase (ATP) low > 58
Dickeya dianthicola ME23 0.55 DZA65_RS20970 gluconate operon transcriptional repressor GntR 0.81 DZA65_RS20830 phosphoenolpyruvate carboxykinase (ATP) low > 75
Dickeya dadantii 3937 0.55 DDA3937_RS19785 gluconate operon transcriptional repressor GntR 0.81 DDA3937_RS19610 phosphoenolpyruvate carboxykinase (ATP) low > 74
Dickeya dianthicola 67-19 0.55 HGI48_RS19900 gluconate operon transcriptional repressor GntR 0.81 HGI48_RS19740 phosphoenolpyruvate carboxykinase (ATP) low > 71
Rahnella sp. WP5 0.54 EX31_RS05060 gluconate operon transcriptional repressor GntR 0.79 EX31_RS04780 phosphoenolpyruvate carboxykinase (ATP) low > 89
Erwinia tracheiphila HP pepo 2.2 0.54 IJEDHG_08040 gntR gluconate operon transcriptional repressor GntR 0.78 IJEDHG_11970 pckA phosphoenolpyruvate carboxykinase (ATP) low > 61
Serratia liquefaciens MT49 0.54 IAI46_23965 gluconate operon transcriptional repressor GntR 0.81 IAI46_23770 phosphoenolpyruvate carboxykinase (ATP) low > 86
Erwinia tracheiphila SCR3 0.53 LU632_RS19160 gntR gluconate operon transcriptional repressor GntR 0.78 LU632_RS22930 pckA phosphoenolpyruvate carboxykinase (ATP) low > 74
Pectobacterium carotovorum WPP14 0.52 HER17_RS01450 gluconate operon transcriptional repressor GntR 0.80 HER17_RS01710 phosphoenolpyruvate carboxykinase (ATP) low > 75
Pantoea sp. MT58 0.52 IAI47_01650 gluconate operon transcriptional repressor GntR 0.77 IAI47_01830 phosphoenolpyruvate carboxykinase (ATP) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_00264 HTH-type transcriptional regulator GntR 0.81 OHPLBJKB_00300 Phosphoenolpyruvate carboxykinase (ATP) low > 74
Escherichia coli ECRC101 0.52 MCAODC_07365 gntR gluconate operon transcriptional repressor GntR 0.81 MCAODC_07575 pckA phosphoenolpyruvate carboxykinase (ATP) low > 88
Escherichia coli ECOR38 0.52 HEPCGN_15660 gntR gluconate operon transcriptional repressor GntR 0.81 HEPCGN_15865 pckA phosphoenolpyruvate carboxykinase (ATP) low > 88
Escherichia coli ECRC99 0.52 KEDOAH_11305 gntR gluconate operon transcriptional repressor GntR 0.81 KEDOAH_11095 pckA phosphoenolpyruvate carboxykinase (ATP) — —
Escherichia coli BW25113 0.52 b3438 gntR DNA-binding transcriptional repressor (NCBI) 0.81 b3403 pck phosphoenolpyruvate carboxykinase (NCBI) low > 76
Escherichia coli ECRC62 0.52 BNILDI_02870 gntR gluconate operon transcriptional repressor GntR 0.81 BNILDI_02685 pckA phosphoenolpyruvate carboxykinase (ATP) low > 75
Escherichia coli ECRC100 0.52 OKFHMN_16835 gntR gluconate operon transcriptional repressor GntR 0.81 OKFHMN_17045 pckA phosphoenolpyruvate carboxykinase (ATP) low > 79
Escherichia coli ECRC102 0.52 NIAGMN_14605 gntR gluconate operon transcriptional repressor GntR 0.81 NIAGMN_14815 pckA phosphoenolpyruvate carboxykinase (ATP) low > 80
Escherichia coli ECRC98 0.52 JDDGAC_20465 gntR gluconate operon transcriptional repressor GntR 0.81 JDDGAC_20675 pckA phosphoenolpyruvate carboxykinase (ATP) low > 87
Escherichia coli Nissle 1917 0.52 ECOLIN_RS19675 gluconate operon transcriptional repressor GntR 0.81 ECOLIN_RS19435 phosphoenolpyruvate carboxykinase (ATP) low > 55
Escherichia fergusonii Becca 0.52 EFB2_00382 HTH-type transcriptional regulator GntR 0.81 EFB2_00425 Phosphoenolpyruvate carboxykinase (ATP) low > 86
Enterobacter sp. TBS_079 0.52 MPMX20_04319 HTH-type transcriptional regulator GntR 0.79 MPMX20_04290 Phosphoenolpyruvate carboxykinase (ATP) low > 85
Klebsiella pneumoniae MKP103 0.51 KDGMDA_07120 gluconate operon transcriptional repressor GntR 0.81 KDGMDA_06970 phosphoenolpyruvate carboxykinase (ATP) low > 95
Escherichia coli ECOR27 0.51 NOLOHH_08635 gntR gluconate operon transcriptional repressor GntR 0.81 NOLOHH_08835 pckA phosphoenolpyruvate carboxykinase (ATP) low > 76
Escherichia coli BL21 0.51 ECD_03289 d-gluconate inducible gluconate regulon transcriptional repressor 0.81 ECD_03255 phosphoenolpyruvate carboxykinase [ATP] low > 61
Enterobacter asburiae PDN3 0.51 EX28DRAFT_4274 transcriptional regulator, LacI family 0.79 EX28DRAFT_4140 phosphoenolpyruvate carboxykinase (ATP) low > 76
Klebsiella michiganensis M5al 0.51 BWI76_RS26245 transcriptional regulator 0.79 BWI76_RS26155 phosphoenolpyruvate carboxykinase (ATP) low > 92
Pantoea agglomerans CFBP13505 P0401 0.50 PagCFBP13505_RS18155 gluconate operon transcriptional repressor GntR 0.77 PagCFBP13505_RS18350 phosphoenolpyruvate carboxykinase (ATP) low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.49 GFF570 Gluconate utilization system Gnt-I transcriptional repressor 0.81 GFF615 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) low > 78
Pseudomonas aeruginosa PA14 0.36 IKLFDK_11375 LacI family DNA-binding transcriptional regulator GntR 0.34 IKLFDK_27515 phosphoenolpyruvate carboxykinase 0.29 78
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_558 Gluconate utilization system Gnt-I transcriptional repressor 0.34 Pf1N1B4_1779 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) — —
Pseudomonas lactucae CFBP13502 0.34 GEMAOFIL_04536 HTH-type transcriptional regulator GntR 0.35 GEMAOFIL_00469 Phosphoenolpyruvate carboxykinase (ATP) low > 93
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS23595 LacI family DNA-binding transcriptional regulator 0.34 PFLU_RS01320 phosphoenolpyruvate carboxykinase 0.25 31
Pseudomonas stutzeri RCH2 0.34 Psest_2126 Transcriptional regulators 0.33 Psest_3988 phosphoenolpyruvate carboxykinase (ATP) low > 67
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_1925 Gluconate utilization system Gnt-I transcriptional repressor 0.33 PfGW456L13_420 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) low > 87
Pseudomonas fluorescens SBW25 0.34 PFLU_RS23595 LacI family DNA-binding transcriptional regulator 0.34 PFLU_RS01320 phosphoenolpyruvate carboxykinase low > 109
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_2865 Gluconate utilization system Gnt-I transcriptional repressor 0.32 Pf6N2E2_3899 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) low > 103
Pseudomonas sp. RS175 0.34 PFR28_00593 HTH-type transcriptional regulator GntR 0.34 PFR28_04874 Phosphoenolpyruvate carboxykinase (ATP) 0.19 45
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_05065 LacI family transcriptional regulator 0.32 AO356_10140 phosphoenolpyruvate carboxykinase [ATP] 0.32 46
Pseudomonas sp. SVBP6 0.34 COO64_RS25590 LacI family DNA-binding transcriptional regulator 0.33 COO64_RS00660 phosphoenolpyruvate carboxykinase low > 93
Pseudomonas simiae WCS417 0.33 PS417_21990 LacI family transcriptional regulator 0.34 PS417_01210 hypothetical protein low > 88
Pseudomonas sp. DMC3 0.33 GFF5268 HTH-type transcriptional regulator GntR 0.33 GFF4175 Phosphoenolpyruvate carboxykinase (ATP) low > 89
Pseudomonas fluorescens FW300-N2E3 0.33 AO353_03255 LacI family transcriptional regulator 0.33 AO353_11775 phosphoenolpyruvate carboxykinase [ATP] low > 101
Pseudomonas segetis P6 0.33 MPMX49_02373 HTH-type transcriptional regulator GntR 0.32 MPMX49_00777 Phosphoenolpyruvate carboxykinase (ATP) low > 75
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_3336 transcriptional regulator, LacI family 0.33 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) low > 86
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_3336 transcriptional regulator, LacI family 0.33 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) low > 86
Alteromonas macleodii MIT1002 0.31 MIT1002_03475 Gluconate utilization system GNT-I transcriptional repressor 0.36 MIT1002_03972 Phosphoenolpyruvate carboxykinase [ATP] low > 70
Pseudomonas sp. BP01 0.31 JOY50_RS23605 LacI family DNA-binding transcriptional regulator 0.33 JOY50_RS18315 phosphoenolpyruvate carboxykinase low > 84
Xanthobacter sp. DMC5 0.31 GFF1533 HTH-type transcriptional regulator GntR 0.40 GFF4136 Phosphoenolpyruvate carboxykinase (ATP) — —
Sinorhizobium meliloti 1021 0.29 SM_b20667 LacI family transcriptional regulator 0.41 SMc02562 phosphoenolpyruvate carboxykinase low > 103
Phaeobacter inhibens DSM 17395 0.28 PGA1_c33870 putative HTH-type transcriptional regulator GntR 0.39 PGA1_c01140 phosphoenolpyruvate carboxykinase 0.56 3
Agrobacterium fabrum C58 0.28 Atu4685 LacI family transcriptional regulator 0.42 Atu0035 phosphoenolpyruvate carboxykinase low > 89
Dinoroseobacter shibae DFL-12 0.27 Dshi_3322 transcriptional regulator, LacI family (RefSeq) 0.39 Dshi_0213 Phosphoenolpyruvate carboxykinase (ATP) (RefSeq) 0.64 2
Rhizobium sp. OAE497 0.25 ABIE40_RS04445 LacI family DNA-binding transcriptional regulator 0.40 ABIE40_RS19415 phosphoenolpyruvate carboxykinase low > 107

Not shown: 18 genomes with orthologs for CSW01_01485 only; 22 genomes with orthologs for CSW01_13810 only