Conservation of cofitness between CSW01_03280 and CSW01_13285 in Vibrio cholerae E7946 ATCC 55056

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03280 16S rRNA methyltransferase 1.0 CSW01_13285 ribulose-phosphate 3-epimerase 0.77 13
Pectobacterium carotovorum WPP14 0.39 HER17_RS18080 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.76 HER17_RS01795 ribulose-phosphate 3-epimerase low > 75
Escherichia coli BW25113 0.39 b4371 rsmC 16S ribosomal RNA m2G1207 methyltransferase (NCBI) 0.77 b3386 rpe ribulose-phosphate 3-epimerase (NCBI) low > 76
Escherichia coli BL21 0.39 ECD_04246 16S rRNA m(2)G1207 methyltransferase, SAM-dependent 0.77 ECD_03238 D-ribulose-5-phosphate 3-epimerase low > 61
Escherichia coli ECRC100 0.39 OKFHMN_11300 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.77 OKFHMN_17130 dam adenine-specific DNA-methyltransferase — —
Escherichia coli Nissle 1917 0.39 ECOLIN_RS25090 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.77 ECOLIN_RS19345 ribulose-phosphate 3-epimerase low > 55
Escherichia coli ECRC102 0.39 NIAGMN_09150 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.77 NIAGMN_14900 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC98 0.39 JDDGAC_14895 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.77 JDDGAC_20760 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC101 0.39 MCAODC_01815 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.77 MCAODC_07660 dam adenine-specific DNA-methyltransferase — —
Serratia liquefaciens MT49 0.39 IAI46_02860 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.76 IAI46_23685 ribulose-phosphate 3-epimerase low > 87
Erwinia tracheiphila HP pepo 2.2 0.39 IJEDHG_05115 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.76 IJEDHG_12050 rpe ribulose-phosphate 3-epimerase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_03691 Ribosomal RNA small subunit methyltransferase C 0.77 OHPLBJKB_00317 Ribulose-phosphate 3-epimerase — —
Escherichia coli ECRC99 0.39 KEDOAH_16845 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.77 KEDOAH_11010 dam adenine-specific DNA-methyltransferase — —
Erwinia tracheiphila SCR3 0.39 LU632_RS03750 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.76 LU632_RS22850 rpe ribulose-phosphate 3-epimerase — —
Escherichia coli ECOR38 0.39 HEPCGN_09305 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.77 HEPCGN_15950 rpe ribulose-phosphate 3-epimerase low > 88
Enterobacter sp. TBS_079 0.38 MPMX20_00669 Ribosomal RNA small subunit methyltransferase C 0.77 MPMX20_04275 Ribulose-phosphate 3-epimerase low > 85
Erwinia amylovora T8 0.38 OLJFJH_01925 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.76 OLJFJH_04075 ribulose-phosphate 3-epimerase — —
Escherichia fergusonii Becca 0.38 EFB2_04076 Ribosomal RNA small subunit methyltransferase C 0.77 EFB2_00442 Ribulose-phosphate 3-epimerase — —
Escherichia coli ECRC62 0.38 BNILDI_07980 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.77 BNILDI_02600 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECOR27 0.38 NOLOHH_03620 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.77 NOLOHH_08920 dam adenine-specific DNA-methyltransferase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.38 GFF1031 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) 0.76 GFF633 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) low > 78
Klebsiella michiganensis M5al 0.38 BWI76_RS04080 16S rRNA (guanine(1207)-N(2))-methyltransferase 0.77 BWI76_RS26070 ribulose-phosphate 3-epimerase — —
Enterobacter asburiae PDN3 0.38 EX28DRAFT_3579 16S RNA G1207 methylase RsmC 0.78 EX28DRAFT_4156 ribulose-phosphate 3-epimerase low > 76
Dickeya dadantii 3937 0.37 DDA3937_RS03190 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.75 DDA3937_RS19530 ribulose-phosphate 3-epimerase — —
Dickeya dianthicola ME23 0.36 DZA65_RS03385 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.76 DZA65_RS20745 ribulose-phosphate 3-epimerase — —
Dickeya dianthicola 67-19 0.36 HGI48_RS03340 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.76 HGI48_RS19660 ribulose-phosphate 3-epimerase — —
Klebsiella pneumoniae MRSN742743 0.36 KFA93_RS10870 rsmC;go_function=nucleic 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.78 KFA93_RS10245 rpe;go_function=D-ribulose-phosphate ribulose-phosphate 3-epimerase — —
Rahnella sp. WP5 0.35 EX31_RS04120 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.74 EX31_RS04705 ribulose-phosphate 3-epimerase — —
Klebsiella pneumoniae MKP103 0.35 KDGMDA_12350 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.78 KDGMDA_06895 ribulose-phosphate 3-epimerase — —
Pantoea sp. MT58 0.35 IAI47_16375 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.76 IAI47_01910 ribulose-phosphate 3-epimerase — —
Pantoea agglomerans CFBP13505 P0401 0.35 PagCFBP13516_RS16685 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.76 PagCFBP13516_RS01910 rpe ribulose-phosphate 3-epimerase — —
Shewanella loihica PV-4 0.32 Shew_3230 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) 0.77 Shew_0219 ribulose-phosphate 3-epimerase (RefSeq) — —
Pseudomonas syringae pv. syringae B728a 0.31 Psyr_0986 16S rRNA m(2)G 1207 methyltransferase 0.71 Psyr_4611 ribulose-5-phosphate 3-epimerase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.31 Psyr_0986 16S rRNA m(2)G 1207 methyltransferase 0.71 Psyr_4611 ribulose-5-phosphate 3-epimerase — —
Pseudomonas aeruginosa MRSN321 0.31 DY961_RS28955 class I SAM-dependent methyltransferase 0.70 DY961_RS23065 rpe;go_function=D-ribulose-phosphate ribulose-phosphate 3-epimerase — —
Pseudomonas aeruginosa PA14 0.31 IKLFDK_00370 Ribosomal RNA small subunit methyltransferase C 0.70 IKLFDK_22375 ribulose-phosphate 3-epimerase — —
Pseudomonas aeruginosa PUPa3 0.31 DQ20_RS55740 class I SAM-dependent methyltransferase 0.70 DQ20_RS36285 rpe;go_function=D-ribulose-phosphate ribulose-phosphate 3-epimerase — —
Pseudomonas sp. SVBP6 0.30 COO64_RS03375 class I SAM-dependent methyltransferase 0.71 COO64_RS22440 rpe ribulose-phosphate 3-epimerase low > 91
Shewanella sp. ANA-3 0.30 Shewana3_3447 16S rRNA m(2)G 1207 methyltransferase (RefSeq) 0.78 Shewana3_3888 ribulose-5-phosphate 3-epimerase (RefSeq) — —
Pseudomonas sp. RS175 0.30 PFR28_03623 Ribosomal RNA small subunit methyltransferase C 0.70 PFR28_04049 Ribulose-phosphate 3-epimerase — —
Pseudomonas orientalis W4I3 0.29 QF045_RS07495 class I SAM-dependent methyltransferase 0.70 QF045_RS00135 ribulose-phosphate 3-epimerase — —
Pseudomonas simiae WCS417 0.29 PS417_04525 16S rRNA methyltransferase 0.71 PS417_25735 ribulose-phosphate 3-epimerase — —
Pseudomonas lactucae CFBP13502 0.29 GEMAOFIL_01108 Ribosomal RNA small subunit methyltransferase C 0.71 GEMAOFIL_05267 Ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens SBW25-INTG 0.29 PFLU_RS04570 class I SAM-dependent methyltransferase 0.71 PFLU_RS27390 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens SBW25 0.29 PFLU_RS04570 class I SAM-dependent methyltransferase 0.71 PFLU_RS27390 ribulose-phosphate 3-epimerase — —
Pseudomonas sp. DMC3 0.29 GFF4455 Ribosomal RNA small subunit methyltransferase C 0.69 GFF22 Ribulose-phosphate 3-epimerase — —
Shewanella oneidensis MR-1 0.29 SO0828 conserved hypothetical protein (NCBI ptt file) 0.78 SO0292 rpe ribulose-phosphate 3-epimerase (NCBI ptt file) — —
Pseudomonas fluorescens FW300-N2C3 0.29 AO356_06940 16S rRNA methyltransferase 0.70 AO356_14410 ribulose phosphate epimerase — —
Pseudomonas protegens RBAN4 0.29 FABNJH_25780 rsmC Ribosomal RNA small subunit methyltransferase C 0.70 FABNJH_28355 rpe ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens FW300-N2E2 0.29 Pf6N2E2_3247 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) 0.71 Pf6N2E2_4820 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Shewanella amazonensis SB2B 0.29 Sama_0569 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) 0.77 Sama_3362 ribulose-phosphate 3-epimerase (RefSeq) — —
Pseudomonas sp. S08-1 0.29 OH686_06345 16S rRNA (guanine(1207)-N(2))-methyltransferase 0.70 OH686_15115 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens GW456-L13 0.29 PfGW456L13_1616 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) 0.70 PfGW456L13_1215 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Pseudomonas fluorescens FW300-N1B4 0.28 Pf1N1B4_2953 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) 0.71 Pf1N1B4_2543 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Pseudomonas fluorescens FW300-N2E3 0.28 AO353_14995 16S rRNA methyltransferase 0.70 AO353_07240 ribulose phosphate epimerase — —
Pseudomonas putida KT2440 0.27 PP_0761 Ribosomal RNA small subunit methyltransferase C 0.71 PP_0415 ribulose-5-phosphate 3-epimerase — —
Pseudomonas sp. BP01 0.27 JOY50_RS19445 class I SAM-dependent methyltransferase 0.71 JOY50_RS18210 rpe ribulose-phosphate 3-epimerase — —
Acinetobacter radioresistens SK82 0.27 MPMX26_02491 Ribosomal RNA small subunit methyltransferase C 0.73 MPMX26_02569 Ribulose-phosphate 3-epimerase — —
Acinetobacter baumannii LAC-4 0.27 RR41_RS03295 methyltransferase 0.75 RR41_RS15745 ribulose-phosphate 3-epimerase — —
Pseudomonas segetis P6 0.26 ACVTMO_RS18370 methyltransferase 0.71 ACVTMO_RS04395 rpe ribulose-phosphate 3-epimerase — —

Not shown: 0 genomes with orthologs for CSW01_03280 only; 65 genomes with orthologs for CSW01_13285 only