| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_14325 | | peptidase | 1.0 | CSW01_12815 | | RNA polymerase sigma-54 factor | 0.49 | 9 |
| Shewanella loihica PV-4 | 0.50 | Shew_1006 | | ErfK/YbiS/YcfS/YnhG family protein (RefSeq) | 0.56 | Shew_3311 | | RNA polymerase factor sigma-54 (RefSeq) | low | > 60 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.46 | GFF3396 | | L,D-transpeptidase YcfS | 0.63 | GFF2946 | | RNA polymerase sigma-54 factor RpoN | low | > 78 |
| Klebsiella michiganensis M5al | 0.45 | BWI76_RS11200 | | transpeptidase | 0.62 | BWI76_RS25265 | | RNA polymerase factor sigma-54 | — | — |
| Rahnella sp. WP5 | 0.45 | EX31_RS13880 | | L,D-transpeptidase family protein | 0.63 | EX31_RS12400 | | RNA polymerase factor sigma-54 | low | > 89 |
| Enterobacter sp. TBS_079 | 0.45 | MPMX20_01794 | | putative L,D-transpeptidase YcfS | 0.61 | MPMX20_04108 | | RNA polymerase sigma-54 factor | — | — |
| Serratia liquefaciens MT49 | 0.44 | IAI46_11175 | | L,D-transpeptidase family protein | 0.62 | IAI46_22470 | | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC100 | 0.44 | OKFHMN_03475 | ldtC | L,D-transpeptidase LdtC | 0.63 | OKFHMN_17940 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC99 | 0.44 | KEDOAH_24280 | ldtC | L,D-transpeptidase LdtC | 0.63 | KEDOAH_10210 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECOR27 | 0.44 | NOLOHH_21000 | ldtC | L,D-transpeptidase LdtC | 0.62 | NOLOHH_09740 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC62 | 0.44 | BNILDI_19165 | ldtC | L,D-transpeptidase LdtC | 0.63 | BNILDI_01795 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC101 | 0.44 | MCAODC_22835 | ldtC | L,D-transpeptidase LdtC | 0.63 | MCAODC_08460 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECRC102 | 0.44 | NIAGMN_24355 | ldtC | L,D-transpeptidase LdtC | 0.63 | NIAGMN_15700 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.44 | OHPLBJKB_02553 | | putative L,D-transpeptidase YcfS | 0.63 | OHPLBJKB_00498 | | RNA polymerase sigma-54 factor | — | — |
| Escherichia coli ECRC98 | 0.44 | JDDGAC_07135 | ldtC | L,D-transpeptidase LdtC | 0.63 | JDDGAC_21565 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli BL21 | 0.44 | ECD_01109 | | L,D-transpeptidase linking Lpp to murein | 0.63 | ECD_03067 | | RNA polymerase, sigma 54 (sigma N) factor | low | > 61 |
| Enterobacter asburiae PDN3 | 0.44 | EX28DRAFT_1817 | | Uncharacterized protein conserved in bacteria | 0.62 | EX28DRAFT_3256 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | — | — |
| Escherichia fergusonii Becca | 0.44 | EFB2_02862 | | putative L,D-transpeptidase YcfS | 0.63 | EFB2_00621 | | RNA polymerase sigma-54 factor | — | — |
| Escherichia coli BW25113 | 0.44 | b1113 | ycfS | hypothetical protein (NCBI) | 0.62 | b3202 | rpoN | DNA-directed RNA polymerase subunit N (NCBI) | — | — |
| Escherichia coli Nissle 1917 | 0.44 | ECOLIN_RS06420 | | L,D-transpeptidase LdtC | 0.63 | ECOLIN_RS18425 | | RNA polymerase factor sigma-54 | — | — |
| Escherichia coli ECOR38 | 0.44 | HEPCGN_24010 | ldtC | L,D-transpeptidase LdtC | 0.63 | HEPCGN_16815 | rpoN | RNA polymerase factor sigma-54 | — | — |
| Pantoea sp. MT58 | 0.43 | IAI47_10850 | | L,D-transpeptidase family protein | 0.62 | IAI47_17185 | | RNA polymerase factor sigma-54 | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.43 | HER17_RS08950 | | L,D-transpeptidase family protein | 0.62 | HER17_RS20060 | | RNA polymerase factor sigma-54 | low | > 75 |
| Dickeya dianthicola ME23 | 0.42 | DZA65_RS13280 | | L,D-transpeptidase family protein | 0.61 | DZA65_RS01510 | | RNA polymerase factor sigma-54 | 0.46 | 37 |
| Dickeya dianthicola 67-19 | 0.42 | HGI48_RS12815 | | L,D-transpeptidase family protein | 0.61 | HGI48_RS01445 | | RNA polymerase factor sigma-54 | low | > 71 |
| Dickeya dadantii 3937 | 0.42 | DDA3937_RS12750 | | L,D-transpeptidase family protein | 0.61 | DDA3937_RS01530 | | RNA polymerase factor sigma-54 | low | > 74 |
| Shewanella amazonensis SB2B | 0.40 | Sama_0726 | | ErfK/YbiS/YcfS/YnhG (RefSeq) | 0.57 | Sama_3088 | | RNA polymerase factor sigma-54 (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.38 | Shewana3_0844 | | ErfK/YbiS/YcfS/YnhG family protein (RefSeq) | 0.57 | Shewana3_0672 | | RNA polymerase factor sigma-54 (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.37 | SO3748 | | LysM domain protein (NCBI ptt file) | 0.57 | SO3961 | rpoN | RNA polymerase sigma-54 factor (NCBI ptt file) | low | > 76 |
| Pseudomonas sp. BP01 | 0.36 | JOY50_RS25815 | | L,D-transpeptidase family protein | 0.57 | JOY50_RS11130 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas sp. S08-1 | 0.36 | OH686_01780 | | L,D-transpeptidase | 0.56 | OH686_08540 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.36 | AO353_19015 | | hypothetical protein | 0.58 | AO353_05180 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.36 | Pf6N2E2_2474 | | ErfK/YbiS/YcfS/YnhG family protein | 0.56 | Pf6N2E2_3267 | | RNA polymerase sigma-54 factor RpoN | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.36 | Pf1N1B4_292 | | ErfK/YbiS/YcfS/YnhG family protein | 0.57 | Pf1N1B4_1080 | | RNA polymerase sigma-54 factor RpoN | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.36 | Psyr_2070 | | ErfK/YbiS/YcfS/YnhG | 0.58 | Psyr_4147 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | — | — |
| Pseudomonas aeruginosa PA14 | 0.36 | IKLFDK_14500 | | YkuD domain-containing protein | 0.57 | IKLFDK_01770 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas sp. RS175 | 0.36 | PFR28_00960 | | hypothetical protein | 0.56 | PFR28_00173 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.36 | Psyr_2070 | | ErfK/YbiS/YcfS/YnhG | 0.58 | Psyr_4147 | | RNA polymerase, sigma 54 subunit, RpoN/SigL | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.36 | AO356_03215 | | hypothetical protein | 0.58 | AO356_07035 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas putida KT2440 | 0.36 | PP_2320 | | conserved exported protein of unknown function | 0.57 | PP_0952 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.36 | PfGW456L13_2221 | | ErfK/YbiS/YcfS/YnhG family protein | 0.57 | PfGW456L13_5014 | | RNA polymerase sigma-54 factor RpoN | — | — |
| Pseudomonas stutzeri RCH2 | 0.35 | Psest_2334 | | Uncharacterized protein conserved in bacteria | 0.56 | Psest_3313 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas sp. SVBP6 | 0.35 | COO64_RS09790 | | L,D-transpeptidase family protein | 0.56 | COO64_RS04285 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas simiae WCS417 | 0.35 | PS417_08415 | | hypothetical protein | 0.58 | PS417_04345 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas sp. DMC3 | 0.35 | GFF4626 | | putative L,D-transpeptidase YbiS | 0.57 | GFF1828 | | RNA polymerase sigma-54 factor | — | — |
| Pseudomonas fluorescens SBW25 | 0.35 | PFLU_RS08365 | | L,D-transpeptidase family protein | 0.58 | PFLU_RS04400 | | RNA polymerase factor sigma-54 | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.35 | PFLU_RS08365 | | L,D-transpeptidase family protein | 0.58 | PFLU_RS04400 | | RNA polymerase factor sigma-54 | — | — |
| Erwinia amylovora T8 | 0.34 | OLJFJH_16675 | | L D-transpeptidase | 0.61 | OLJFJH_07070 | | RNA polymerase factor sigma-54 | low | > 58 |
Not shown: 0 genomes with orthologs for CSW01_14325 only; 59 genomes with orthologs for CSW01_12815 only