Conservation of cofitness between CSW01_14325 and CSW01_12260 in Vibrio cholerae E7946 ATCC 55056

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_14325 peptidase 1.0 CSW01_12260 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.44 13
Shewanella loihica PV-4 0.50 Shew_1006 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) 0.53 Shew_3434 N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) low > 60
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF3396 L,D-transpeptidase YcfS 0.61 GFF129 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD low > 78
Klebsiella michiganensis M5al 0.45 BWI76_RS11200 transpeptidase 0.61 BWI76_RS04850 N-acetylmuramoyl-L-alanine amidase low > 92
Rahnella sp. WP5 0.45 EX31_RS13880 L,D-transpeptidase family protein 0.59 EX31_RS03510 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD low > 89
Enterobacter sp. TBS_079 0.45 MPMX20_01794 putative L,D-transpeptidase YcfS 0.62 MPMX20_00801 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD low > 85
Escherichia coli ECRC101 0.44 MCAODC_22835 ldtC L,D-transpeptidase LdtC 0.61 MCAODC_01040 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD low > 87
Escherichia coli ECOR27 0.44 NOLOHH_21000 ldtC L,D-transpeptidase LdtC 0.61 NOLOHH_02870 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD low > 75
Escherichia coli ECRC62 0.44 BNILDI_19165 ldtC L,D-transpeptidase LdtC 0.61 BNILDI_08740 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD low > 75
Escherichia coli ECRC99 0.44 KEDOAH_24280 ldtC L,D-transpeptidase LdtC 0.61 KEDOAH_17630 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_02553 putative L,D-transpeptidase YcfS 0.61 OHPLBJKB_03551 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD low > 73
Escherichia coli ECRC100 0.44 OKFHMN_03475 ldtC L,D-transpeptidase LdtC 0.61 OKFHMN_10525 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD low > 80
Escherichia coli ECRC98 0.44 JDDGAC_07135 ldtC L,D-transpeptidase LdtC 0.61 JDDGAC_14120 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD low > 86
Escherichia coli BL21 0.44 ECD_01109 L,D-transpeptidase linking Lpp to murein 0.61 ECD_00109 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; murein amidase low > 61
Escherichia coli ECRC102 0.44 NIAGMN_24355 ldtC L,D-transpeptidase LdtC 0.61 NIAGMN_08375 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD — —
Serratia liquefaciens MT49 0.44 IAI46_11175 L,D-transpeptidase family protein 0.57 IAI46_03535 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD low > 86
Enterobacter asburiae PDN3 0.44 EX28DRAFT_1817 Uncharacterized protein conserved in bacteria 0.61 EX28DRAFT_3703 N-acetylmuramoyl-L-alanine amidase — —
Escherichia fergusonii Becca 0.44 EFB2_02862 putative L,D-transpeptidase YcfS 0.62 EFB2_03939 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD low > 86
Escherichia coli Nissle 1917 0.44 ECOLIN_RS06420 L,D-transpeptidase LdtC 0.62 ECOLIN_RS00590 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD low > 55
Escherichia coli BW25113 0.44 b1113 ycfS hypothetical protein (NCBI) 0.61 b0110 ampD N-acetyl-anhydromuranmyl-L-alanine amidase (NCBI) low > 76
Escherichia coli ECOR38 0.44 HEPCGN_24010 ldtC L,D-transpeptidase LdtC 0.62 HEPCGN_08505 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD low > 87
Pantoea sp. MT58 0.43 IAI47_10850 L,D-transpeptidase family protein 0.58 IAI47_15840 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD low > 76
Pectobacterium carotovorum WPP14 0.43 HER17_RS08950 L,D-transpeptidase family protein 0.56 HER17_RS03260 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD low > 75
Dickeya dianthicola ME23 0.42 DZA65_RS13280 L,D-transpeptidase family protein 0.56 DZA65_RS19020 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD low > 75
Dickeya dianthicola 67-19 0.42 HGI48_RS12815 L,D-transpeptidase family protein 0.56 HGI48_RS17875 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD low > 71
Dickeya dadantii 3937 0.42 DDA3937_RS12750 L,D-transpeptidase family protein 0.56 DDA3937_RS17945 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD low > 74
Shewanella amazonensis SB2B 0.40 Sama_0726 ErfK/YbiS/YcfS/YnhG (RefSeq) 0.53 Sama_0372 N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) low > 62
Shewanella sp. ANA-3 0.38 Shewana3_0844 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) 0.55 Shewana3_0423 N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.37 SO3748 LysM domain protein (NCBI ptt file) 0.53 SO0421 ampD AmpD protein (NCBI ptt file) 0.38 18
Pseudomonas sp. BP01 0.36 JOY50_RS25815 L,D-transpeptidase family protein 0.51 JOY50_RS19335 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD low > 84
Pseudomonas sp. S08-1 0.36 OH686_01780 L,D-transpeptidase 0.53 OH686_16530 1,6-anhydro-N-acetylmuramyl-L-alanine amidase 0.52 78
Pseudomonas fluorescens FW300-N2E3 0.36 AO353_19015 hypothetical protein 0.51 AO353_05510 N-acetyl-anhydromuranmyl-L-alanine amidase low > 101
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_292 ErfK/YbiS/YcfS/YnhG family protein 0.53 Pf1N1B4_1151 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD — —
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_2474 ErfK/YbiS/YcfS/YnhG family protein 0.52 Pf6N2E2_3344 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD low > 103
Pseudomonas fluorescens FW300-N2C3 0.36 AO356_03215 hypothetical protein 0.52 AO356_07360 N-acetyl-anhydromuranmyl-L-alanine amidase low > 104
Pseudomonas aeruginosa PA14 0.36 IKLFDK_14500 YkuD domain-containing protein 0.55 IKLFDK_01470 beta-lactamase expression regulator AmpD low > 101
Pseudomonas sp. RS175 0.36 PFR28_00960 hypothetical protein 0.53 PFR28_00100 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD low > 88
Pseudomonas syringae pv. syringae B728a 0.36 Psyr_2070 ErfK/YbiS/YcfS/YnhG 0.52 Psyr_0817 N-acetylmuramoyl-L-alanine amidase, family 2 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.36 Psyr_2070 ErfK/YbiS/YcfS/YnhG 0.52 Psyr_0817 N-acetylmuramoyl-L-alanine amidase, family 2 low > 86
Pseudomonas putida KT2440 0.36 PP_2320 conserved exported protein of unknown function 0.51 PP_0789 N-acetyl-anhydromuramyl-L-alanine-amidase low > 96
Pseudomonas fluorescens GW456-L13 0.36 PfGW456L13_2221 ErfK/YbiS/YcfS/YnhG family protein 0.52 PfGW456L13_5081 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD — —
Pseudomonas stutzeri RCH2 0.35 Psest_2334 Uncharacterized protein conserved in bacteria 0.52 Psest_0725 Negative regulator of beta-lactamase expression low > 67
Pseudomonas sp. SVBP6 0.35 COO64_RS09790 L,D-transpeptidase family protein 0.56 COO64_RS03530 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD — —
Pseudomonas simiae WCS417 0.35 PS417_08415 hypothetical protein 0.53 PS417_03935 N-acetyl-anhydromuranmyl-L-alanine amidase low > 88
Pseudomonas sp. DMC3 0.35 GFF4626 putative L,D-transpeptidase YbiS 0.53 GFF4998 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD low > 89
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS08365 L,D-transpeptidase family protein 0.53 PFLU_RS03980 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.30 39
Pseudomonas fluorescens SBW25 0.35 PFLU_RS08365 L,D-transpeptidase family protein 0.53 PFLU_RS03980 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.70 53
Erwinia amylovora T8 0.34 OLJFJH_16675 L D-transpeptidase 0.61 OLJFJH_01045 1 6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.69 44

Not shown: 0 genomes with orthologs for CSW01_14325 only; 22 genomes with orthologs for CSW01_12260 only