| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_05940 | | anthranilate phosphoribosyltransferase | 1.0 | CSW01_10660 | | sigma-54-dependent Fis family transcriptional regulator | 0.85 | 8 |
| Serratia liquefaciens MT49 | 0.60 | IAI46_14030 | | anthranilate phosphoribosyltransferase | 0.31 | IAI46_19460 | | two-component system response regulator GlrR | low | > 87 |
| Alteromonas macleodii MIT1002 | 0.54 | MIT1002_01428 | | Anthranilate synthase component II | 0.61 | MIT1002_01083 | | Transcriptional regulatory protein ZraR | low | > 70 |
| Shewanella loihica PV-4 | 0.50 | Shew_2253 | | anthranilate phosphoribosyltransferase (RefSeq) | 0.58 | Shew_1364 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | low | > 60 |
| Shewanella oneidensis MR-1 | 0.49 | SO3021 | trpD | anthranilate phosphoribosyltransferase (NCBI ptt file) | 0.58 | SO3230 | flrC | flagellar regulatory protein C (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.48 | Shewana3_1518 | trpD | anthranilate phosphoribosyltransferase (RefSeq) | 0.58 | Shewana3_1340 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.48 | Sama_2131 | trpD | anthranilate phosphoribosyltransferase (RefSeq) | 0.58 | Sama_2299 | | response regulator receiver protein (RefSeq) | low | > 62 |
| Rhodopseudomonas palustris CGA009 | 0.37 | TX73_014980 | | anthranilate phosphoribosyltransferase | 0.30 | TX73_006510 | | sigma-54 dependent transcriptional regulator | — | — |
| Azospirillum brasilense Sp245 | 0.36 | AZOBR_RS07455 | | anthranilate phosphoribosyltransferase | 0.30 | AZOBR_RS20165 | | ATPase AAA | low | > 97 |
| Caulobacter crescentus NA1000 Δfur | 0.36 | CCNA_01975 | | anthranilate phosphoribosyltransferase | 0.31 | CCNA_00954 | | AAA-family response regulator flbD | low | > 67 |
| Caulobacter crescentus NA1000 | 0.36 | CCNA_01975 | | anthranilate phosphoribosyltransferase | 0.31 | CCNA_00954 | | AAA-family response regulator flbD | low | > 66 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.36 | A4249_RS06170 | | anthranilate phosphoribosyltransferase | 0.30 | A4249_RS09765 | | sigma-54 dependent transcriptional regulator | — | — |
| Dechlorosoma suillum PS | 0.35 | Dsui_0169 | | anthranilate phosphoribosyltransferase | 0.45 | Dsui_1758 | | response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains | — | — |
| Rhodospirillum rubrum S1H | 0.33 | Rru_A1896 | | Anthranilate phosphoribosyl transferase (NCBI) | 0.31 | Rru_A0540 | | Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) | low | > 58 |
| Bosea sp. OAE506 | 0.33 | ABIE41_RS17420 | | anthranilate phosphoribosyltransferase | 0.30 | ABIE41_RS10895 | | sigma-54 dependent transcriptional regulator | — | — |
| Magnetospirillum magneticum AMB-1 | 0.33 | AMB_RS14410 | | anthranilate phosphoribosyltransferase | 0.32 | AMB_RS02570 | | sigma-54-dependent Fis family transcriptional regulator | — | — |
| Pseudomonas stutzeri RCH2 | 0.33 | Psest_3648 | | anthranilate phosphoribosyltransferase | 0.50 | Psest_1767 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | low | > 67 |
| Pseudomonas segetis P6 | 0.31 | MPMX49_00891 | | Anthranilate phosphoribosyltransferase | 0.51 | MPMX49_03148 | | Regulatory protein AtoC | — | — |
| Pseudomonas putida KT2440 | 0.31 | PP_0421 | | Anthranilate phosphoribosyltransferase | 0.48 | PP_4371 | | two component system AtoC DNA-binding transcriptional activator | low | > 96 |
| Marinobacter adhaerens HP15 | 0.30 | HP15_3290 | | anthranilate phosphoribosyltransferase | 0.51 | HP15_2328 | | two component, sigma54 specific, transcriptional regulator, Fis family | low | > 73 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.30 | Psyr_4580 | | anthranilate phosphoribosyltransferase | 0.48 | Psyr_3459 | | Helix-turn-helix, Fis-type | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.30 | Psyr_4580 | | anthranilate phosphoribosyltransferase | 0.48 | Psyr_3459 | | Helix-turn-helix, Fis-type | low | > 86 |
| Pseudomonas sp. BP01 | 0.30 | JOY50_RS18235 | trpD | anthranilate phosphoribosyltransferase | 0.49 | JOY50_RS00695 | | sigma-54 dependent transcriptional regulator | low | > 84 |
| Pseudomonas aeruginosa PA14 | 0.28 | IKLFDK_22175 | | Anthranilate phosphoribosyltransferase | 0.49 | IKLFDK_05055 | | sigma-54-dependent response regulator transcription factor FleR | low | > 98 |
| Pseudomonas aeruginosa PUPa3 | 0.28 | DQ20_RS36170 | trpD;go_function=anthranilate | anthranilate phosphoribosyltransferase | 0.49 | DQ20_RS45880 | fleR;inference=COORDINATES | sigma-54-dependent response regulator transcription factor FleR | low | > 101 |
| Pseudomonas aeruginosa MRSN321 | 0.28 | DY961_RS23195 | trpD;go_function=anthranilate | anthranilate phosphoribosyltransferase | 0.49 | DY961_RS06955 | fleR;inference=COORDINATES | sigma-54-dependent response regulator transcription factor FleR | low | > 100 |
| Pseudomonas sp. SVBP6 | 0.28 | COO64_RS22415 | trpD | anthranilate phosphoribosyltransferase | 0.48 | COO64_RS21290 | | sigma-54 dependent transcriptional regulator | low | > 93 |
| Pseudomonas fluorescens SBW25 | 0.26 | PFLU_RS27370 | | anthranilate phosphoribosyltransferase | 0.49 | PFLU_RS21785 | | sigma-54-dependent Fis family transcriptional regulator | low | > 109 |
| Pseudomonas sp. DMC3 | 0.26 | GFF17 | | Anthranilate phosphoribosyltransferase | 0.50 | GFF2447 | | Regulatory protein AtoC | low | > 89 |
| Pseudomonas fluorescens SBW25-INTG | 0.26 | PFLU_RS27370 | | anthranilate phosphoribosyltransferase | 0.49 | PFLU_RS21785 | | sigma-54-dependent Fis family transcriptional regulator | low | > 109 |
| Pseudomonas lactucae CFBP13502 | 0.26 | GEMAOFIL_05263 | | Anthranilate phosphoribosyltransferase | 0.49 | GEMAOFIL_04161 | | Regulatory protein AtoC | low | > 96 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.26 | CA264_05065 | | anthranilate phosphoribosyltransferase | 0.32 | CA264_09510 | | sigma-54-dependent Fis family transcriptional regulator | low | > 74 |
| Pseudomonas simiae WCS417 | 0.26 | PS417_25715 | | anthranilate phosphoribosyltransferase | 0.49 | PS417_19815 | | Fis family transcriptional regulator | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.26 | AO353_07215 | | anthranilate phosphoribosyltransferase | 0.50 | AO353_18670 | | Fis family transcriptional regulator | low | > 101 |
| Pseudomonas orientalis W4I3 | 0.26 | QF045_RS00110 | | anthranilate phosphoribosyltransferase | 0.49 | QF045_RS21945 | | sigma-54 dependent transcriptional regulator | low | > 93 |
| Pseudomonas fluorescens FW300-N2E2 | 0.26 | Pf6N2E2_4825 | | Anthranilate phosphoribosyltransferase (EC 2.4.2.18) | 0.50 | Pf6N2E2_2595 | | Flagellar regulatory protein FleQ | low | > 103 |
| Pseudomonas fluorescens GW456-L13 | 0.26 | PfGW456L13_1221 | | Anthranilate phosphoribosyltransferase (EC 2.4.2.18) | 0.49 | PfGW456L13_4355 | | Flagellar regulatory protein FleQ | low | > 87 |
| Pseudomonas sp. RS175 | 0.26 | PFR28_04044 | | Anthranilate phosphoribosyltransferase | 0.50 | PFR28_00830 | | Regulatory protein AtoC | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.25 | AO356_14435 | | anthranilate phosphoribosyltransferase | 0.48 | AO356_03845 | | Fis family transcriptional regulator | low | > 104 |
Not shown: 60 genomes with orthologs for CSW01_05940 only; 11 genomes with orthologs for CSW01_10660 only