| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_00225 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 1.0 | CSW01_09640 | | C4-dicarboxylate ABC transporter permease | 0.47 | 4 |
| Pectobacterium carotovorum WPP14 | 0.57 | HER17_RS02215 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.32 | HER17_RS19685 | | TRAP transporter large permease | low | > 75 |
| Rahnella sp. WP5 | 0.57 | EX31_RS15985 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.32 | EX31_RS08020 | | TRAP transporter large permease | low | > 89 |
| Pantoea sp. MT58 | 0.57 | IAI47_02280 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.33 | IAI47_03220 | | TRAP transporter large permease | low | > 76 |
| Pantoea agglomerans CFBP13505 P0401 | 0.56 | PagCFBP13516_RS02295 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.33 | PagCFBP13516_RS03460 | | TRAP transporter large permease | low | > 80 |
| Enterobacter sp. TBS_079 | 0.56 | MPMX20_04196 | | Ribosomal RNA small subunit methyltransferase B | 0.33 | MPMX20_04347 | | C4-dicarboxylate TRAP transporter large permease protein DctM | low | > 85 |
| Shewanella amazonensis SB2B | 0.53 | Sama_0041 | | sun protein (RefSeq) | 0.53 | Sama_2211 | | alpha-ketoglutarate TRAP transporter, large permease component (from data) | low | > 62 |
| Shewanella loihica PV-4 | 0.51 | Shew_3738 | | sun protein (RefSeq) | 0.52 | Shew_1444 | | dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component (from data) | low | > 60 |
| Shewanella oneidensis MR-1 | 0.51 | SO0030 | sun | sun protein (NCBI ptt file) | 0.56 | SO3136 | dctM | C4-dicarboxylate transport protein (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.51 | Shewana3_0033 | | sun protein (RefSeq) | 0.55 | Shewana3_1414 | | TRAP dicarboxylate transporter, DctM subunit (RefSeq) | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.49 | MIT1002_00018 | | Ribosomal RNA small subunit methyltransferase B | 0.29 | MIT1002_02428 | | Neu5Ac permease | low | > 70 |
| Pseudomonas stutzeri RCH2 | 0.48 | Psest_0021 | | ribosomal RNA small subunit methyltransferase RsmB | 0.54 | Psest_4270 | | TRAP transporter, DctM subunit | low | > 67 |
| Pseudomonas protegens RBAN4 | 0.45 | FABNJH_00110 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.47 | FABNJH_13900 | dctM | C4-dicarboxylate TRAP transporter large permease protein DctM | — | — |
| Pseudomonas sp. DMC3 | 0.45 | GFF590 | | Ribosomal RNA small subunit methyltransferase B | 0.56 | GFF1144 | | C4-dicarboxylate TRAP transporter large permease protein DctM | low | > 89 |
| Pseudomonas putida KT2440 | 0.45 | PP_0066 | | Ribosomal RNA small subunit methyltransferase B | 0.30 | PP_1167 | | D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) | low | > 96 |
| Pseudomonas aeruginosa MRSN321 | 0.44 | PFGADD_00017 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.54 | PFGADD_05414 | dctM | C4-dicarboxylate TRAP transporter large permease protein DctM | low | > 99 |
| Pseudomonas aeruginosa PUPa3 | 0.44 | NPBIFN_00017 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.54 | NPBIFN_05491 | dctM | C4-dicarboxylate TRAP transporter large permease protein DctM | low | > 101 |
| Pseudomonas sp. BP01 | 0.44 | JOY50_RS08250 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.31 | JOY50_RS02045 | | TRAP transporter large permease | low | > 84 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.44 | Psyr_0017 | | 16S rRNA m(5)C-967 methyltransferase | 0.31 | Psyr_0898 | | TRAP dicarboxylate transporter, DctM subunit | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.44 | Psyr_0017 | | 16S rRNA m(5)C-967 methyltransferase | 0.31 | Psyr_0898 | | TRAP dicarboxylate transporter, DctM subunit | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.44 | AO356_11275 | | 16S rRNA methyltransferase | 0.31 | AO356_23045 | | hypothetical protein | low | > 104 |
| Pseudomonas aeruginosa PA14 | 0.44 | IKLFDK_25475 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.54 | IKLFDK_27640 | | C4-dicarboxylate TRAP transporter large permease protein DctM | low | > 98 |
| Pseudomonas fluorescens FW300-N2E2 | 0.44 | Pf6N2E2_4121 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | 0.31 | Pf6N2E2_485 | | TRAP-type C4-dicarboxylate transport system, large permease component | low | > 103 |
| Pseudomonas sp. RS175 | 0.44 | PFR28_04663 | | Ribosomal RNA small subunit methyltransferase B | 0.57 | PFR28_00121 | | C4-dicarboxylate TRAP transporter large permease protein DctM | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.43 | PFLU_RS00080 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.50 | PFLU_RS16920 | | TRAP transporter large permease | 0.48 | 101 |
| Pseudomonas fluorescens SBW25-INTG | 0.43 | PFLU_RS00080 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.50 | PFLU_RS16920 | | TRAP transporter large permease | low | > 109 |
| Pseudomonas segetis P6 | 0.43 | ACVTMO_RS01345 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.53 | ACVTMO_RS21740 | dctM | C4-dicarboxylate TRAP transporter large permease protein DctM | low | > 75 |
| Pseudomonas sp. FW215-L2 | 0.43 | GFF404 | | Ribosomal RNA small subunit methyltransferase B | 0.50 | GFF2479 | | C4-dicarboxylate TRAP transporter large permease protein DctM | low | > 111 |
| Pseudomonas orientalis W4I3 | 0.43 | QF045_RS03020 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.32 | QF045_RS19040 | | TRAP transporter large permease | low | > 93 |
| Pseudomonas lactucae CFBP13502 | 0.43 | GEMAOFIL_00223 | | Ribosomal RNA small subunit methyltransferase B | 0.31 | GEMAOFIL_03770 | | C4-dicarboxylate TRAP transporter large permease protein DctM | — | — |
| Pseudomonas simiae WCS417 | 0.43 | PS417_00085 | | 16S rRNA methyltransferase | 0.50 | PS417_14900 | | C4-dicarboxylate ABC transporter permease | low | > 88 |
| Dechlorosoma suillum PS | 0.37 | Dsui_0812 | | ribosomal RNA small subunit methyltransferase RsmB | 0.46 | Dsui_3153 | | TRAP transporter, DctM subunit | low | > 51 |
| Castellaniella sp019104865 MT123 | 0.34 | ABCV34_RS14225 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.54 | ABCV34_RS05060 | | TRAP transporter large permease | low | > 48 |
| Acidovorax sp. GW101-3H11 | 0.30 | Ac3H11_4461 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | 0.33 | Ac3H11_163 | | TRAP-type C4-dicarboxylate transport system, large permease component | low | > 79 |
| Herbaspirillum seropedicae SmR1 | 0.29 | HSERO_RS00355 | | methyltransferase | 0.45 | HSERO_RS04250 | | C4-dicarboxylate ABC transporter permease | low | > 78 |
| Variovorax sp. SCN45 | 0.27 | GFF5878 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) | 0.33 | GFF6470 | | TRAP-type C4-dicarboxylate transport system, large permease component | low | > 127 |
| Variovorax sp. OAS795 | 0.27 | ABID97_RS05360 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.31 | ABID97_RS19635 | | TRAP transporter large permease | low | > 91 |
| Azospirillum sp. SherDot2 | 0.25 | MPMX19_02327 | | Ribosomal RNA small subunit methyltransferase B | 0.42 | MPMX19_00661 | | C4-dicarboxylate TRAP transporter large permease protein DctM | low | > 112 |
Not shown: 51 genomes with orthologs for CSW01_00225 only; 7 genomes with orthologs for CSW01_09640 only