Conservation of cofitness between CSW01_03090 and CSW01_08450 in Vibrio cholerae E7946 ATCC 55056

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03090 rRNA (cytidine-2'-O-)-methyltransferase 1.0 CSW01_08450 antimicrobial peptide ABC transporter permease SapB 0.69 10
Pectobacterium carotovorum WPP14 0.65 HER17_RS19860 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.53 HER17_RS09490 putrescine ABC transporter permease SapB — —
Erwinia amylovora T8 0.65 OLJFJH_02280 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.53 OLJFJH_13655 putrescine ABC transporter permease SapB low > 58
Escherichia coli ECOR38 0.64 HEPCGN_17110 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.51 HEPCGN_25735 sapB putrescine ABC transporter permease SapB — —
Escherichia coli Nissle 1917 0.64 ECOLIN_RS18085 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.51 ECOLIN_RS07820 putrescine export ABC transporter permease SapB — —
Escherichia fergusonii Becca 0.64 EFB2_00677 Ribosomal RNA small subunit methyltransferase I 0.51 EFB2_02627 Putrescine export system permease protein SapB — —
Escherichia coli ECRC101 0.64 MCAODC_08755 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.51 MCAODC_15805 sapB putrescine ABC transporter permease SapB — —
Escherichia coli BL21 0.64 ECD_03013 16S rRNA C1402 2'-O-ribose methyltransferase, SAM-dependent 0.51 ECD_01270 antimicrobial peptide transport ABC transporter permease — —
Escherichia coli ECRC98 0.64 JDDGAC_21860 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.51 JDDGAC_05010 sapB putrescine ABC transporter permease SapB — —
Escherichia coli ECRC99 0.64 KEDOAH_09915 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.51 KEDOAH_26310 sapB putrescine ABC transporter permease SapB — —
Escherichia coli BW25113 0.64 b3146 yraL predicted methyltransferase (NCBI) 0.51 b1293 sapB predicted antimicrobial peptide transporter subunit (NCBI) low > 76
Dickeya dadantii 3937 0.64 DDA3937_RS01715 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.50 DDA3937_RS12445 peptide ABC transporter permease SapB low > 74
Escherichia coli ECRC102 0.64 NIAGMN_15995 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.51 NIAGMN_26635 sapB putrescine ABC transporter permease SapB — —
Escherichia coli ECRC100 0.64 OKFHMN_18235 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.51 OKFHMN_02465 sapB putrescine ABC transporter permease SapB — —
Erwinia tracheiphila SCR3 0.64 LU632_RS02230 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.48 LU632_RS11575 sapB putrescine ABC transporter permease SapB low > 74
Dickeya dianthicola 67-19 0.64 HGI48_RS01610 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.50 HGI48_RS12510 peptide ABC transporter permease SapB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.64 OHPLBJKB_00555 Ribosomal RNA small subunit methyltransferase I 0.51 OHPLBJKB_02389 Putrescine export system permease protein SapB — —
Shewanella loihica PV-4 0.63 Shew_0228 uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq) 0.29 Shew_2499 binding-protein-dependent transport systems inner membrane component (RefSeq) — —
Erwinia tracheiphila HP pepo 2.2 0.63 IJEDHG_06680 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.48 IJEDHG_23000 sapB putrescine ABC transporter permease SapB low > 61
Dickeya dianthicola ME23 0.63 DZA65_RS01685 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.50 DZA65_RS12960 peptide ABC transporter permease SapB — —
Pantoea agglomerans CFBP13505 P0401 0.63 PagCFBP13505_RS11450 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.46 PagCFBP13505_RS06775 peptide ABC transporter permease SapB — —
Escherichia coli ECRC62 0.63 BNILDI_01495 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.51 BNILDI_18300 sapB putrescine ABC transporter permease SapB — —
Escherichia coli ECOR27 0.63 NOLOHH_10035 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.51 NOLOHH_20150 sapB putrescine ABC transporter permease SapB — —
Shewanella oneidensis MR-1 0.63 SO0301 hypothetical methyltransferase (NCBI ptt file) 0.31 SO1804 sapB peptide ABC transporter, permease protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.62 Shewana3_3879 hypothetical protein (RefSeq) 0.32 Shewana3_2651 binding-protein-dependent transport systems inner membrane component (RefSeq) — —
Shewanella amazonensis SB2B 0.62 Sama_3353 hypothetical protein (RefSeq) 0.30 Sama_1234 peptide ABC transporter, permease protein (RefSeq) low > 62
Enterobacter asburiae PDN3 0.61 EX28DRAFT_3195 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.47 EX28DRAFT_0973 ABC-type antimicrobial peptide transport system, permease component — —
Enterobacter sp. TBS_079 0.61 MPMX20_04050 Ribosomal RNA small subunit methyltransferase I 0.49 MPMX20_02475 Putrescine export system permease protein SapB low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.61 GFF1521 rRNA small subunit methyltransferase I 0.48 GFF2689 Peptide transport system permease protein SapB low > 78
Rahnella sp. WP5 0.61 EX31_RS12550 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.51 EX31_RS15705 peptide ABC transporter permease SapB — —
Pantoea sp. MT58 0.61 IAI47_02850 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.49 IAI47_09375 peptide ABC transporter permease SapB — —
Klebsiella michiganensis M5al 0.60 BWI76_RS24910 rRNA (cytidine-2'-O-)-methyltransferase 0.48 BWI76_RS12415 antimicrobial peptide ABC transporter permease SapB — —
Serratia liquefaciens MT49 0.59 IAI46_22295 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.52 IAI46_13530 peptide ABC transporter permease SapB — —
Klebsiella pneumoniae MKP103 0.58 KDGMDA_05780 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.48 KDGMDA_19880 putrescine ABC transporter permease SapB low > 95
Pseudomonas segetis P6 0.56 MPMX49_03819 Ribosomal RNA small subunit methyltransferase I 0.31 MPMX49_03887 Dipeptide transport system permease protein DppB low > 75
Pseudomonas sp. SVBP6 0.54 COO64_RS11845 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.32 COO64_RS04100 ABC transporter permease subunit low > 93
Pseudomonas lactucae CFBP13502 0.53 GEMAOFIL_01121 Ribosomal RNA small subunit methyltransferase I 0.32 GEMAOFIL_01016 Dipeptide transport system permease protein DppB low > 93
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_15290 methyltransferase 0.31 AO353_05395 peptide ABC transporter permease low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_4112 Protein of unknown function UPF0011 0.32 Psyr_4239 Binding-protein-dependent transport systems inner membrane component low > 86
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_4112 Protein of unknown function UPF0011 0.32 Psyr_4239 Binding-protein-dependent transport systems inner membrane component low > 86
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.32 PFLU_RS04100 ABC transporter permease subunit low > 109
Pseudomonas simiae WCS417 0.53 PS417_04590 methyltransferase 0.32 PS417_04060 dipeptide ABC transporter, permease component (from data) low > 88
Pseudomonas fluorescens SBW25 0.53 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.32 PFLU_RS04100 ABC transporter permease subunit low > 109
Pseudomonas putida KT2440 0.52 PP_1326 16S rRNA 2'-O-ribose C1402 methyltransferase 0.32 PP_0881 dipeptide ABC transporter - putative membrane subunit low > 96
Pseudomonas fluorescens GW456-L13 0.51 PfGW456L13_1643 rRNA small subunit methyltransferase I 0.32 PfGW456L13_5055 Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) low > 87
Pseudomonas aeruginosa PA14 0.50 IKLFDK_01980 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.33 IKLFDK_01565 Di/tripeptide transport system permease protein DppB — —
Alteromonas macleodii MIT1002 0.49 MIT1002_03113 Ribosomal RNA small subunit methyltransferase I 0.32 MIT1002_01140 Dipeptide transport system permease protein DppB — —
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_2109 probable S-adenosylmethionine-dependent methyltransferase, YraL family 0.32 B158DRAFT_1046 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components low > 40
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS01940 16S rRNA methyltransferase 0.34 BPHYT_RS18685 peptide ABC transporter permease low > 109
Paraburkholderia bryophila 376MFSha3.1 0.39 H281DRAFT_02152 16S rRNA (cytidine1402-2'-O)-methyltransferase 0.33 H281DRAFT_05803 dipeptide transport system permease protein low > 103
Rhizobium sp. OAE497 0.38 ABIE40_RS01370 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.32 ABIE40_RS03350 ABC transporter permease subunit low > 107
Agrobacterium fabrum C58 0.37 Atu0302 tetrapyrrole methylase family protein 0.33 Atu4114 dipeptide ABC transporter permease low > 89
Azospirillum sp. SherDot2 0.35 MPMX19_02471 Ribosomal RNA small subunit methyltransferase I 0.33 MPMX19_04418 Dipeptide transport system permease protein DppB low > 112
Azospirillum brasilense Sp245 0.34 AZOBR_RS02155 16S rRNA methyltransferase 0.33 AZOBR_RS21765 peptide ABC transporter permease low > 97
Rhodospirillum rubrum S1H 0.32 Rru_A3693 Protein of unknown function UPF0011 (NCBI) 0.33 Rru_A2357 Binding-protein-dependent transport systems inner membrane component (NCBI) low > 58

Not shown: 48 genomes with orthologs for CSW01_03090 only; 0 genomes with orthologs for CSW01_08450 only