Conservation of cofitness between CSW01_02495 and CSW01_05285 in Vibrio cholerae E7946 ATCC 55056

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02495 16S rRNA (uracil(1498)-N(3))-methyltransferase 1.0 CSW01_05285 AsmA family protein 0.45 2
Rahnella sp. WP5 0.73 EX31_RS02660 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.11 EX31_RS11535 outer membrane assembly protein AsmA low > 89
Escherichia coli BL21 0.72 ECD_02776 16S rRNA m(3)U1498 methyltransferase, SAM-dependent 0.11 ECD_01970 suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane-anchored periplasmic protein low > 61
Escherichia coli ECRC102 0.72 NIAGMN_17045 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.12 NIAGMN_22225 asmA outer membrane assembly protein AsmA low > 80
Escherichia coli Nissle 1917 0.72 ECOLIN_RS16390 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.11 ECOLIN_RS12150 outer membrane assembly protein AsmA — —
Escherichia coli ECOR38 0.72 HEPCGN_18585 Ribosomal RNA small subunit methyltransferase E 0.11 HEPCGN_02980 asmA outer membrane assembly protein AsmA low > 88
Escherichia coli ECRC100 0.72 OKFHMN_19280 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.12 OKFHMN_24280 asmA outer membrane assembly protein AsmA low > 79
Escherichia coli ECRC101 0.72 MCAODC_09800 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.11 MCAODC_20660 asmA outer membrane assembly protein AsmA low > 87
Escherichia coli ECRC62 0.72 BNILDI_09730 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.11 BNILDI_14530 asmA outer membrane assembly protein AsmA low > 75
Escherichia coli ECOR27 0.72 NOLOHH_11150 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.11 NOLOHH_15620 asmA outer membrane assembly protein AsmA low > 76
Escherichia coli ECRC99 0.72 KEDOAH_08860 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.12 KEDOAH_03870 asmA outer membrane assembly protein AsmA — —
Escherichia coli BW25113 0.72 b2946 yggJ orf, hypothetical protein (VIMSS) 0.11 b2064 asmA predicted assembly protein (NCBI) low > 76
Escherichia coli ECRC98 0.72 JDDGAC_22910 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.12 JDDGAC_28390 asmA outer membrane assembly protein AsmA 0.30 28
Klebsiella pneumoniae MKP103 0.71 KDGMDA_04585 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.12 KDGMDA_26250 outer membrane assembly protein AsmA low > 95
Enterobacter asburiae PDN3 0.70 EX28DRAFT_2984 RNA methyltransferase, RsmE family 0.11 EX28DRAFT_0490 Uncharacterized protein involved in outer membrane biogenesis low > 76
Pantoea sp. MT58 0.70 IAI47_03620 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.11 IAI47_06915 outer membrane assembly protein AsmA low > 76
Pantoea agglomerans CFBP13505 P0401 0.70 PagCFBP13505_RS16075 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.11 PagCFBP13505_RS01025 outer membrane assembly protein AsmA low > 74
Serratia liquefaciens MT49 0.70 IAI46_21385 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.12 IAI46_07985 outer membrane assembly protein AsmA low > 87
Enterobacter sp. TBS_079 0.70 MPMX20_03804 Ribosomal RNA small subunit methyltransferase E 0.11 MPMX20_03046 hypothetical protein low > 85
Erwinia amylovora T8 0.69 OLJFJH_08575 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.10 OLJFJH_12010 outer membrane assembly protein AsmA low > 58
Erwinia tracheiphila HP pepo 2.2 0.69 IJEDHG_03425 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.11 IJEDHG_18850 asmA outer membrane assembly protein AsmA low > 61
Erwinia tracheiphila SCR3 0.69 LU632_RS05485 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.11 LU632_RS08750 asmA outer membrane assembly protein AsmA low > 73
Dickeya dadantii 3937 0.69 DDA3937_RS18555 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.09 DDA3937_RS06700 outer membrane assembly protein AsmA 0.38 68
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF3048 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.11 GFF3863 A/G-specific adenine glycosylase (EC 3.2.2.-) low > 78
Dickeya dianthicola ME23 0.67 DZA65_RS19625 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.09 DZA65_RS07070 outer membrane assembly protein AsmA low > 75
Dickeya dianthicola 67-19 0.67 HGI48_RS18490 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.09 HGI48_RS06715 outer membrane assembly protein AsmA low > 71
Pectobacterium carotovorum WPP14 0.67 HER17_RS02640 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.10 HER17_RS14640 outer membrane assembly protein AsmA low > 75
Shewanella sp. ANA-3 0.66 Shewana3_3444 16S ribosomal RNA methyltransferase RsmE (RefSeq) 0.24 Shewana3_2372 AsmA protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.65 SO0832 conserved hypothetical protein TIGR00046 (NCBI ptt file) 0.25 SO2566 asmA asmA protein (NCBI ptt file) low > 76
Marinobacter adhaerens HP15 0.48 HP15_2926 ribosomal RNA small subunit methyltransferase E 0.10 HP15_3014 AsmA family protein low > 73
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_08050 16S rRNA methyltransferase 0.08 AO353_12055 cell envelope biogenesis protein AsmA low > 101
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_13565 16S rRNA methyltransferase 0.09 AO356_09825 cell envelope biogenesis protein AsmA low > 104
Pseudomonas simiae WCS417 0.43 PS417_26545 16S rRNA methyltransferase 0.09 PS417_01550 cell envelope biogenesis protein AsmA low > 88
Pseudomonas sp. RS175 0.43 PFR28_04209 Ribosomal RNA small subunit methyltransferase E 0.10 PFR28_04926 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2E2 0.43 Pf6N2E2_4630 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.10 Pf6N2E2_3845 A/G-specific adenine glycosylase (EC 3.2.2.-) low > 103
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.09 PFLU_RS01595 AsmA family protein low > 109
Pseudomonas fluorescens SBW25 0.43 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.09 PFLU_RS01595 AsmA family protein low > 109
Pseudomonas aeruginosa PA14 0.43 IKLFDK_23325 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.09 IKLFDK_27765 AsmA family protein low > 98
Pseudomonas aeruginosa MRSN321 0.43 DY961_RS22075 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.08 DY961_RS11570 AsmA family protein low > 100
Pseudomonas aeruginosa PUPa3 0.43 DQ20_RS37225 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.08 DQ20_RS50530 AsmA family protein low > 101
Pseudomonas lactucae CFBP13502 0.43 GEMAOFIL_05440 Ribosomal RNA small subunit methyltransferase E 0.09 GEMAOFIL_00530 hypothetical protein low > 96
Pseudomonas orientalis W4I3 0.43 QF045_RS00940 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.10 QF045_RS04620 AsmA family protein low > 93
Pseudomonas sp. SVBP6 0.43 COO64_RS13645 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.09 COO64_RS00240 AsmA family protein low > 93
Pseudomonas sp. DMC3 0.43 GFF180 Ribosomal RNA small subunit methyltransferase E 0.09 GFF4101 hypothetical protein low > 89
Pseudomonas fluorescens GW456-L13 0.42 PfGW456L13_1043 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.09 PfGW456L13_365 A/G-specific adenine glycosylase (EC 3.2.2.-) low > 87
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_2376 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) 0.10 Pf1N1B4_1630 A/G-specific adenine glycosylase (EC 3.2.2.-) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase 0.10 Psyr_4900 AsmA low > 86
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase 0.10 Psyr_4900 AsmA low > 86
Pseudomonas sp. BP01 0.42 JOY50_RS09765 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.09 JOY50_RS25490 AsmA family protein low > 84
Pseudomonas putida KT2440 0.42 PP_4985 16S rRNA m3U1498 methyltransferase 0.09 PP_0287 conserved exported protein of unknown function low > 96
Pseudomonas segetis P6 0.42 MPMX49_00634 Ribosomal RNA small subunit methyltransferase E 0.10 MPMX49_04305 hypothetical protein low > 75
Pseudomonas sp. S08-1 0.41 OH686_10855 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.10 OH686_14555 A/G-specific adenine glycosylase low > 80
Pseudomonas stutzeri RCH2 0.41 Psest_0305 RNA methyltransferase, RsmE family 0.11 Psest_0146 Uncharacterized protein involved in outer membrane biogenesis low > 67
Phaeobacter inhibens DSM 17395 0.18 PGA1_c02950 RNA methyltransferase-like protein 0.06 PGA1_c24350 Uncharacterized protein involved in outer membrane biogenesis low > 62

Not shown: 64 genomes with orthologs for CSW01_02495 only; 1 genomes with orthologs for CSW01_05285 only