Conservation of cofitness between CSW01_06820 and CSW01_04690 in Vibrio cholerae E7946 ATCC 55056

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_06820 ribosomal RNA large subunit methyltransferase I 1.0 CSW01_04690 MexH family multidrug efflux RND transporter periplasmic adaptor subunit 0.43 16
Enterobacter asburiae PDN3 0.66 EX28DRAFT_1976 Predicted SAM-dependent methyltransferases 0.17 EX28DRAFT_0484 RND family efflux transporter, MFP subunit low > 76
Enterobacter sp. TBS_079 0.66 MPMX20_01617 Ribosomal RNA large subunit methyltransferase I 0.17 MPMX20_03060 Multidrug resistance protein MdtA low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF3258 LSU m5C1962 methyltransferase RlmI 0.15 GFF3855 Multidrug transporter MdtA low > 78
Erwinia amylovora T8 0.64 OLJFJH_15885 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.18 OLJFJH_11975 MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit low > 58
Erwinia tracheiphila SCR3 0.64 LU632_RS10090 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.16 LU632_RS08695 MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit low > 74
Pantoea sp. MT58 0.64 IAI47_12595 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.16 IAI47_06875 MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit low > 76
Serratia liquefaciens MT49 0.64 IAI46_08925 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.16 IAI46_18970 MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit low > 86
Rahnella sp. WP5 0.63 EX31_RS17990 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.16 EX31_RS01490 efflux RND transporter periplasmic adaptor subunit low > 89
Shewanella amazonensis SB2B 0.63 Sama_2965 putative SAM-dependent methyltransferase (RefSeq) 0.26 Sama_1906 HlyD family-like protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.63 Shewana3_0977 SAM-dependent methyltransferase (RefSeq) 0.54 Shewana3_1084 RND family efflux transporter MFP subunit (RefSeq) low > 73
Shewanella oneidensis MR-1 0.62 SO1149 hypothetical SAM-dependent methyltransferase (NCBI ptt file) 0.54 SO3483 HlyD family secretion protein (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.56 MIT1002_01688 Ribosomal RNA large subunit methyltransferase I 0.25 MIT1002_00728 Multidrug transporter MdtA low > 70
Paraburkholderia bryophila 376MFSha3.1 0.48 H281DRAFT_02203 SAM-dependent methyltransferase /23S rRNA m(5)C-1962 methyltransferase 0.13 H281DRAFT_03189 membrane fusion protein, multidrug efflux system low > 103
Paraburkholderia graminis OAS925 0.47 ABIE53_000425 23S rRNA (cytosine1962-C5)-methyltransferase 0.14 ABIE53_004107 multidrug efflux system membrane fusion protein low > 113
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS01670 23S rRNA methyltransferase 0.16 RR42_RS15650 hemolysin D low > 128
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS19815 RlmI/RlmK family 23S rRNA methyltransferase 0.17 CA265_RS06870 efflux transporter periplasmic adaptor subunit low > 88
Variovorax sp. OAS795 0.37 ABID97_RS06155 class I SAM-dependent methyltransferase 0.17 ABID97_RS17355 efflux RND transporter periplasmic adaptor subunit 0.46 28
Pontibacter actiniarum KMM 6156, DSM 19842 0.32 CA264_05605 RlmI/RlmK family 23S rRNA methyltransferase 0.20 CA264_03650 MexE family multidrug efflux RND transporter periplasmic adaptor subunit low > 74
Phocaeicola dorei CL03T12C01 0.32 ABI39_RS18215 class I SAM-dependent rRNA methyltransferase 0.16 ABI39_RS01260 efflux RND transporter periplasmic adaptor subunit low > 72
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.5393.1 LSU m5C1962 methyltransferase RlmI 0.25 Xcc-8004.1261.1 Membrane fusion protein of RND family multidrug efflux pump low > 74
Lysobacter sp. OAE881 0.30 ABIE51_RS00980 class I SAM-dependent rRNA methyltransferase 0.23 ABIE51_RS16990 efflux RND transporter periplasmic adaptor subunit low > 62
Echinicola vietnamensis KMM 6221, DSM 17526 0.29 Echvi_3350 Predicted SAM-dependent methyltransferases 0.22 Echvi_3741 RND family efflux transporter, MFP subunit low > 79
Pseudomonas syringae pv. syringae B728a 0.28 Psyr_4764 SAM-dependent methyltransferase 0.14 Psyr_2967 Secretion protein HlyD low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.28 Psyr_4764 SAM-dependent methyltransferase 0.14 Psyr_2967 Secretion protein HlyD low > 86
Rhodanobacter denitrificans FW104-10B01 0.27 LRK54_RS06920 class I SAM-dependent rRNA methyltransferase 0.16 LRK54_RS11900 efflux RND transporter periplasmic adaptor subunit low > 59
Rhodanobacter denitrificans MT42 0.27 LRK55_RS06665 class I SAM-dependent rRNA methyltransferase 0.15 LRK55_RS11625 efflux RND transporter periplasmic adaptor subunit low > 63
Rhodanobacter sp. FW510-T8 0.25 OKGIIK_16710 rlmK RlmI/RlmK family 23S rRNA methyltransferase 0.16 OKGIIK_11995 efflux RND transporter periplasmic adaptor subunit low > 52
Desulfovibrio vulgaris Hildenborough JW710 0.24 DVU0495 conserved hypothetical protein (TIGR) 0.17 DVU0060 acrA efflux transporter, RND family, MFP subunit (TIGR) low > 55
Marinobacter adhaerens HP15 0.24 HP15_460 SAM-dependent methyltransferase 0.28 HP15_3694 efflux transporter, RND family, MFP subunit low > 73
Dinoroseobacter shibae DFL-12 0.20 Dshi_1771 hypothetical protein (RefSeq) 0.12 Dshi_0916 efflux transporter, RND family, MFP subunit (RefSeq) low > 64

Not shown: 57 genomes with orthologs for CSW01_06820 only; 4 genomes with orthologs for CSW01_04690 only