Conservation of cofitness between CSW01_00395 and CSW01_03700 in Vibrio cholerae E7946 ATCC 55056

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00395 ribosomal RNA small subunit methyltransferase J 1.0 CSW01_03700 multi-copper polyphenol oxidoreductase 0.70 15
Shewanella amazonensis SB2B 0.61 Sama_3564 hypothetical protein (RefSeq) 0.41 Sama_2604 hypothetical protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.60 Shewana3_4037 hypothetical protein (RefSeq) 0.42 Shewana3_3170 hypothetical protein (RefSeq) low > 73
Shewanella loihica PV-4 0.58 Shew_3647 hypothetical protein (RefSeq) 0.42 Shew_2949 hypothetical protein (RefSeq) low > 60
Rahnella sp. WP5 0.56 EX31_RS05160 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.42 EX31_RS07565 polyphenol oxidase low > 89
Serratia liquefaciens MT49 0.56 IAI46_24205 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.48 IAI46_03990 polyphenol oxidase low > 87
Klebsiella pneumoniae MKP103 0.55 KDGMDA_07420 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.47 KDGMDA_02135 purine nucleoside phosphorylase YfiH low > 95
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_00206 Ribosomal RNA small subunit methyltransferase J 0.46 OHPLBJKB_01113 Polyphenol oxidase low > 74
Escherichia coli BL21 0.55 ECD_03346 16S rRNA m(2)G1516 methyltransferase, SAM-dependent 0.47 ECD_02483 UPF0124 family protein low > 61
Escherichia fergusonii Becca 0.55 EFB2_00318 Ribosomal RNA small subunit methyltransferase J 0.47 EFB2_01297 Polyphenol oxidase low > 86
Escherichia coli BW25113 0.55 b3497 yhiQ predicted SAM-dependent methyltransferase (NCBI) 0.47 b2593 yfiH hypothetical protein (NCBI) low > 76
Escherichia coli Nissle 1917 0.55 ECOLIN_RS19980 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.47 ECOLIN_RS14670 purine nucleoside phosphorylase YfiH low > 55
Escherichia coli ECOR38 0.55 HEPCGN_15330 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.47 HEPCGN_20380 yfiH purine nucleoside phosphorylase YfiH low > 88
Escherichia coli ECRC98 0.55 JDDGAC_20050 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.47 JDDGAC_24920 yfiH purine nucleoside phosphorylase YfiH low > 87
Escherichia coli ECRC101 0.55 MCAODC_06935 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.47 MCAODC_11785 yfiH purine nucleoside phosphorylase YfiH low > 87
Escherichia coli ECRC100 0.55 OKFHMN_16420 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.47 OKFHMN_21255 yfiH purine nucleoside phosphorylase YfiH low > 79
Escherichia coli ECRC102 0.55 NIAGMN_14185 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.47 NIAGMN_19025 yfiH purine nucleoside phosphorylase YfiH low > 80
Escherichia coli ECRC99 0.55 KEDOAH_11725 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.47 KEDOAH_06965 yfiH purine nucleoside phosphorylase YfiH — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF518 rRNA small subunit methyltransferase J 0.47 GFF4183 COG1496: Uncharacterized conserved protein low > 78
Enterobacter asburiae PDN3 0.55 EX28DRAFT_4064 Putative SAM-dependent methyltransferase 0.48 EX28DRAFT_2694 YfiH family protein low > 76
Escherichia coli ECOR27 0.55 NOLOHH_08355 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.47 NOLOHH_12930 yfiH purine nucleoside phosphorylase YfiH low > 76
Escherichia coli ECRC62 0.55 BNILDI_03205 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.46 BNILDI_11735 yfiH purine nucleoside phosphorylase YfiH low > 75
Erwinia amylovora T8 0.54 OLJFJH_04525 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.47 OLJFJH_09730 purine nucleoside phosphorylase YfiH low > 58
Dickeya dadantii 3937 0.54 DDA3937_RS21270 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.49 DDA3937_RS16105 polyphenol oxidase low > 74
Pectobacterium carotovorum WPP14 0.54 HER17_RS21305 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.44 HER17_RS05405 polyphenol oxidase low > 75
Erwinia tracheiphila HP pepo 2.2 0.53 IJEDHG_12595 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.44 IJEDHG_26865 yfiH purine nucleoside phosphorylase YfiH low > 61
Erwinia tracheiphila SCR3 0.53 LU632_RS19465 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.44 LU632_RS16940 pgeF polyphenol oxidase low > 73
Enterobacter sp. TBS_079 0.53 MPMX20_04396 Ribosomal RNA small subunit methyltransferase J 0.47 MPMX20_03462 Polyphenol oxidase low > 85
Pantoea sp. MT58 0.52 IAI47_01350 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.44 IAI47_04430 polyphenol oxidase low > 76
Pantoea agglomerans CFBP13505 P0401 0.52 PagCFBP13505_RS17850 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.45 PagCFBP13505_RS16535 polyphenol oxidase low > 74
Klebsiella michiganensis M5al 0.50 BWI76_RS26605 16S rRNA (guanine(1516)-N(2))-methyltransferase 0.47 BWI76_RS21445 hypothetical protein low > 92
Dickeya dianthicola ME23 0.50 DZA65_RS00030 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.49 DZA65_RS17325 polyphenol oxidase 0.31 34
Dickeya dianthicola 67-19 0.50 HGI48_RS00040 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ 0.48 HGI48_RS16230 polyphenol oxidase low > 71
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_1325 Protein of unknown function DUF548 0.45 Psyr_0727 Protein of unknown function DUF152 — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_1325 Protein of unknown function DUF548 0.45 Psyr_0727 Protein of unknown function DUF152 low > 86
Pseudomonas segetis P6 0.41 MPMX49_01631 Ribosomal RNA small subunit methyltransferase J 0.47 MPMX49_03921 Polyphenol oxidase low > 75
Pseudomonas sp. S08-1 0.41 OH686_06755 16S rRNA (guanine(1516)-N(2))-methyltransferase 0.43 OH686_16415 Multicopper polyphenol oxidase low > 80
Pseudomonas stutzeri RCH2 0.41 Psest_1563 Protein of unknown function (DUF548). 0.44 Psest_0710 uncharacterized protein, YfiH family — —
Pseudomonas aeruginosa PA14 0.40 IKLFDK_18790 Ribosomal RNA small subunit methyltransferase J 0.46 IKLFDK_00815 peptidoglycan editing factor PgeF low > 98
Pseudomonas sp. SVBP6 0.40 COO64_RS19535 class I SAM-dependent methyltransferase 0.46 COO64_RS11060 pgeF peptidoglycan editing factor PgeF low > 93
Pseudomonas fluorescens FW300-N2E3 0.40 AO353_16350 SAM-dependent methyltransferase 0.42 AO353_14225 laccase low > 101
Pseudomonas aeruginosa MRSN321 0.40 DY961_RS14575 class I SAM-dependent methyltransferase 0.45 DY961_RS23735 pgeF;inference=COORDINATES peptidoglycan editing factor PgeF low > 100
Pseudomonas aeruginosa PUPa3 0.40 DQ20_RS42550 class I SAM-dependent methyltransferase 0.46 DQ20_RS56200 pgeF;inference=COORDINATES peptidoglycan editing factor PgeF low > 101
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_3060 SAM-dependent methyltransferase (EC 2.1.1.-) 0.44 Pf1N1B4_2823 COG1496: Uncharacterized conserved protein — —
Pseudomonas sp. BP01 0.39 JOY50_RS26070 class I SAM-dependent methyltransferase 0.45 JOY50_RS27135 pgeF peptidoglycan editing factor PgeF low > 84
Pseudomonas putida KT2440 0.39 PP_1513 Ribosomal RNA small subunit methyltransferase J 0.45 PP_0624 Uncharacterized protein YfiH low > 96
Pseudomonas orientalis W4I3 0.39 QF045_RS08950 class I SAM-dependent methyltransferase 0.45 QF045_RS06810 peptidoglycan editing factor PgeF low > 93
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_06145 SAM-dependent methyltransferase 0.48 AO356_15930 laccase low > 104
Pseudomonas fluorescens GW456-L13 0.39 PfGW456L13_4733 SAM-dependent methyltransferase (EC 2.1.1.-) 0.43 PfGW456L13_1494 COG1496: Uncharacterized conserved protein low > 87
Pseudomonas sp. DMC3 0.38 GFF2031 Ribosomal RNA small subunit methyltransferase J 0.43 GFF4005 Polyphenol oxidase low > 89
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS06170 ribosomal RNA small subunit methyltransferase J 0.44 PFLU_RS03875 peptidoglycan editing factor PgeF low > 109
Pseudomonas lactucae CFBP13502 0.38 GEMAOFIL_01390 Ribosomal RNA small subunit methyltransferase J 0.45 GEMAOFIL_00970 Polyphenol oxidase low > 96
Pseudomonas fluorescens SBW25 0.38 PFLU_RS06170 ribosomal RNA small subunit methyltransferase J 0.44 PFLU_RS03875 peptidoglycan editing factor PgeF low > 109
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_3094 SAM-dependent methyltransferase (EC 2.1.1.-) 0.45 Pf6N2E2_5128 COG1496: Uncharacterized conserved protein low > 103
Pseudomonas simiae WCS417 0.38 PS417_06100 SAM-dependent methyltransferase 0.45 PS417_03825 laccase low > 88
Alteromonas macleodii MIT1002 0.38 MIT1002_00112 Ribosomal RNA small subunit methyltransferase J 0.33 MIT1002_02678 Laccase domain protein YfiH low > 70
Pseudomonas sp. RS175 0.37 PFR28_00376 Ribosomal RNA small subunit methyltransferase J 0.46 PFR28_03747 Polyphenol oxidase low > 88
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_0446 Adenine-specific DNA methylase 0.44 B158DRAFT_2533 Uncharacterized conserved protein low > 40

Not shown: 0 genomes with orthologs for CSW01_00395 only; 55 genomes with orthologs for CSW01_03700 only