Conservation of cofitness between CSW01_07965 and CSW01_03435 in Vibrio cholerae E7946 ATCC 55056

44 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07965 LysR family transcriptional regulator 1.0 CSW01_03435 protease 0.58 15
Rahnella sp. WP5 0.36 EX31_RS04240 LysR family transcriptional regulator 0.74 EX31_RS08480 U32 family peptidase low > 89
Pectobacterium carotovorum WPP14 0.36 HER17_RS18045 LysR family transcriptional regulator 0.74 HER17_RS18160 U32 family peptidase low > 75
Dickeya dadantii 3937 0.36 DDA3937_RS03225 LysR family transcriptional regulator 0.73 DDA3937_RS03115 U32 family peptidase low > 74
Dickeya dianthicola 67-19 0.35 HGI48_RS03375 LysR family transcriptional regulator 0.73 HGI48_RS03290 U32 family peptidase low > 71
Dickeya dianthicola ME23 0.35 DZA65_RS03420 LysR family transcriptional regulator 0.73 DZA65_RS03285 U32 family peptidase low > 75
Klebsiella michiganensis M5al 0.35 BWI76_RS16740 transcriptional regulator 0.75 BWI76_RS24970 peptidase U32 low > 92
Enterobacter asburiae PDN3 0.34 EX28DRAFT_2404 Transcriptional regulator 0.72 EX28DRAFT_3207 Collagenase and related proteases low > 76
Pantoea sp. MT58 0.34 IAI47_21735 LysR family transcriptional regulator 0.72 IAI47_16965 U32 family peptidase low > 76
Enterobacter sp. TBS_079 0.34 MPMX20_01221 HTH-type transcriptional regulator BenM 0.72 MPMX20_04062 putative protease YhbU low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.32 GFF3076 LysR family transcriptional regulator STM3121 0.74 GFF1510 FIG139552: Putative protease low > 78
Pseudomonas aeruginosa PA14 0.28 IKLFDK_28390 LysR family transcriptional regulator 0.65 IKLFDK_20175 protease low > 101
Cupriavidus basilensis FW507-4G11 0.28 RR42_RS12375 LysR family transcriptional regulator 0.49 RR42_RS08775 protease low > 128
Pseudomonas stutzeri RCH2 0.28 Psest_3707 Transcriptional regulator 0.65 Psest_0835 Collagenase and related proteases low > 67
Pseudomonas sp. SVBP6 0.27 COO64_RS13110 LysR family transcriptional regulator 0.64 COO64_RS14190 peptidase U32 family protein low > 93
Pseudomonas sp. RS175 0.27 PFR28_05019 HTH-type transcriptional regulator BenM 0.63 PFR28_02214 putative protease YhbU low > 88
Pseudomonas simiae WCS417 0.27 PS417_02020 LysR family transcriptional regulator 0.62 PS417_15755 protease low > 88
Pseudomonas fluorescens FW300-N2E2 0.26 Pf6N2E2_3735 LysR family transcriptional regulator YnfL 0.63 Pf6N2E2_721 FIG139552: Putative protease low > 103
Pseudomonas fluorescens FW300-N2C3 0.26 AO356_09290 LysR family transcriptional regulator 0.63 AO356_25160 protease low > 104
Serratia liquefaciens MT49 0.26 IAI46_11680 LysR family transcriptional regulator 0.71 IAI46_02015 U32 family peptidase low > 86
Azospirillum brasilense Sp245 0.26 AZOBR_RS19665 LysR family transcripitonal regulator 0.45 AZOBR_RS28235 protease low > 97
Pseudomonas fluorescens FW300-N1B4 0.25 Pf1N1B4_1530 LysR family transcriptional regulator YnfL 0.63 Pf1N1B4_5746 FIG139552: Putative protease low > 87
Ralstonia solanacearum IBSBF1503 0.25 RALBFv3_RS17920 LysR family transcriptional regulator 0.53 RALBFv3_RS16695 protease — —
Ralstonia solanacearum UW163 0.25 UW163_RS21220 LysR family transcriptional regulator 0.53 UW163_RS18050 protease — —
Pseudomonas fluorescens FW300-N2E3 0.25 AO353_12600 LysR family transcriptional regulator 0.64 AO353_22050 protease low > 101
Ralstonia solanacearum PSI07 0.25 RPSI07_RS05680 LysR family transcriptional regulator 0.53 RPSI07_RS06750 U32 family peptidase low > 81
Ralstonia solanacearum GMI1000 0.24 RS_RS23100 LysR family transcriptional regulator 0.49 RS_RS21795 U32 family peptidase low > 80
Escherichia coli ECOR27 0.23 NOLOHH_18240 ynfL Uncharacterized HTH-type transcriptional regulator YnfL 0.74 NOLOHH_09975 ubiU Ubiquinone biosynthesis protein UbiU 0.51 71
Escherichia fergusonii Becca 0.23 EFB2_02397 Hca operon transcriptional activator HcaR 0.74 EFB2_00665 putative protease YhbU low > 86
Escherichia coli ECRC99 0.23 KEDOAH_00370 ynfL Uncharacterized HTH-type transcriptional regulator YnfL 0.74 KEDOAH_09975 protease — —
Escherichia coli ECRC102 0.23 NIAGMN_00340 ynfL Uncharacterized HTH-type transcriptional regulator YnfL 0.74 NIAGMN_15935 ubiU Ubiquinone biosynthesis protein UbiU — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.23 OHPLBJKB_02131 Hca operon transcriptional activator HcaR 0.74 OHPLBJKB_00542 putative protease YhbU low > 73
Escherichia coli ECRC101 0.23 MCAODC_17675 ynfL Uncharacterized HTH-type transcriptional regulator YnfL 0.74 MCAODC_08695 protease low > 87
Agrobacterium fabrum C58 0.23 Atu4021 LysR family transcriptional regulator 0.41 Atu4397 protease low > 89
Escherichia coli BW25113 0.23 b1595 ynfL predicted DNA-binding transcriptional regulator (NCBI) 0.74 b3158 yhbU predicted peptidase (collagenase-like) (NCBI) low > 76
Escherichia coli BL21 0.23 ECD_01564 LysR family putative transcriptional regulator 0.74 ECD_03025 U32 peptidase family protein — —
Escherichia coli ECRC62 0.23 BNILDI_17030 ynfL Uncharacterized HTH-type transcriptional regulator YnfL 0.74 BNILDI_01555 ubiU Ubiquinone biosynthesis protein UbiU low > 75
Escherichia coli Nissle 1917 0.23 ECOLIN_RS08910 LysR family transcriptional regulator 0.74 ECOLIN_RS18140 peptidase U32 family protein — —
Escherichia coli ECRC98 0.23 JDDGAC_02325 ynfL Uncharacterized HTH-type transcriptional regulator YnfL 0.74 JDDGAC_21800 protease low > 86
Escherichia coli ECRC100 0.23 OKFHMN_27735 ynfL Uncharacterized HTH-type transcriptional regulator YnfL 0.74 OKFHMN_18175 protease low > 80
Escherichia coli ECOR38 0.23 HEPCGN_06110 ynfL Uncharacterized HTH-type transcriptional regulator YnfL 0.74 HEPCGN_17050 protease low > 87
Acidovorax sp. GW101-3H11 0.22 Ac3H11_4928 LysR family transcriptional regulator STM3121 0.57 Ac3H11_4294 FIG139552: Putative protease low > 79
Dechlorosoma suillum PS 0.21 Dsui_3101 transcriptional regulator 0.60 Dsui_0962 collagenase-like protease low > 51
Rhodopseudomonas palustris CGA009 0.20 TX73_002855 LysR family transcriptional regulator 0.46 TX73_004810 U32 family peptidase — —
Azospirillum sp. SherDot2 0.19 MPMX19_03900 Hca operon transcriptional activator HcaR 0.45 MPMX19_03049 putative protease YhbU low > 112

Not shown: 35 genomes with orthologs for CSW01_07965 only; 10 genomes with orthologs for CSW01_03435 only