Conservation of cofitness between CSW01_08115 and CSW01_03280 in Vibrio cholerae E7946 ATCC 55056

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_08115 ribosomal RNA large subunit methyltransferase F 1.0 CSW01_03280 16S rRNA methyltransferase 0.64 5
Shewanella loihica PV-4 0.48 Shew_3741 putative SAM-dependent methyltransferase (RefSeq) 0.32 Shew_3230 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) low > 60
Pseudomonas sp. S08-1 0.46 OH686_17875 23S rRNA (adenine(1618)-N(6))-methyltransferase 0.29 OH686_06345 16S rRNA (guanine(1207)-N(2))-methyltransferase 0.49 29
Pseudomonas segetis P6 0.46 ACVTMO_RS17435 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.26 ACVTMO_RS18370 methyltransferase low > 75
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_17450 23S rRNA methyltransferase 0.29 AO356_06940 16S rRNA methyltransferase low > 104
Pseudomonas aeruginosa PA14 0.45 IKLFDK_19780 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.31 IKLFDK_00370 Ribosomal RNA small subunit methyltransferase C low > 98
Pseudomonas aeruginosa PUPa3 0.45 DQ20_RS48955 rlmF;go_function=rRNA 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.31 DQ20_RS55740 class I SAM-dependent methyltransferase low > 101
Pseudomonas aeruginosa MRSN321 0.45 DY961_RS13675 rlmF;go_function=rRNA 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.31 DY961_RS28955 class I SAM-dependent methyltransferase low > 100
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF702 Ribosomal RNA large subunit methyltransferase F (EC 2.1.1.51) 0.38 GFF1031 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) low > 78
Pseudomonas fluorescens FW300-N2E2 0.44 Pf6N2E2_5416 Ribosomal RNA large subunit methyltransferase F (EC 2.1.1.51) 0.29 Pf6N2E2_3247 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) low > 103
Pseudomonas sp. DMC3 0.44 GFF1948 Ribosomal RNA large subunit methyltransferase F 0.29 GFF4455 Ribosomal RNA small subunit methyltransferase C low > 89
Pectobacterium carotovorum WPP14 0.44 HER17_RS17915 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.39 HER17_RS18080 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 75
Pseudomonas fluorescens FW300-N1B4 0.44 Pf1N1B4_903 Ribosomal RNA large subunit methyltransferase F (EC 2.1.1.51) 0.28 Pf1N1B4_2953 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) low > 87
Shewanella sp. ANA-3 0.44 Shewana3_0127 putative SAM-dependent methyltransferase (RefSeq) 0.30 Shewana3_3447 16S rRNA m(2)G 1207 methyltransferase (RefSeq) low > 73
Pseudomonas putida KT2440 0.43 PP_0976 Ribosomal RNA large subunit methyltransferase F 0.27 PP_0761 Ribosomal RNA small subunit methyltransferase C low > 96
Pseudomonas sp. RS175 0.43 PFR28_03532 Ribosomal RNA large subunit methyltransferase F 0.30 PFR28_03623 Ribosomal RNA small subunit methyltransferase C low > 88
Serratia liquefaciens MT49 0.43 IAI46_07510 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.39 IAI46_02860 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 87
Pseudomonas sp. BP01 0.43 JOY50_RS11245 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.27 JOY50_RS19445 class I SAM-dependent methyltransferase low > 84
Pseudomonas fluorescens FW300-N2E3 0.43 AO353_04555 23S rRNA methyltransferase 0.28 AO353_14995 16S rRNA methyltransferase low > 101
Enterobacter asburiae PDN3 0.43 EX28DRAFT_2183 Predicted SAM-dependent methyltransferase 0.38 EX28DRAFT_3579 16S RNA G1207 methylase RsmC low > 76
Escherichia coli ECOR27 0.43 NOLOHH_22580 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.38 NOLOHH_03620 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 76
Escherichia coli ECRC62 0.43 BNILDI_20860 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.38 BNILDI_07980 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.43 OHPLBJKB_02906 Ribosomal RNA large subunit methyltransferase F 0.39 OHPLBJKB_03691 Ribosomal RNA small subunit methyltransferase C low > 74
Escherichia coli BW25113 0.43 b0807 ybiN orf, hypothetical protein (VIMSS) 0.39 b4371 rsmC 16S ribosomal RNA m2G1207 methyltransferase (NCBI) low > 76
Escherichia coli BL21 0.43 ECD_00774 23S rRNA m(6)A1618 methyltransferase, SAM-dependent 0.39 ECD_04246 16S rRNA m(2)G1207 methyltransferase, SAM-dependent low > 61
Escherichia coli ECOR38 0.43 HEPCGN_01810 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.39 HEPCGN_09305 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 88
Escherichia fergusonii Becca 0.43 EFB2_03298 Ribosomal RNA large subunit methyltransferase F 0.38 EFB2_04076 Ribosomal RNA small subunit methyltransferase C low > 86
Escherichia coli Nissle 1917 0.43 ECOLIN_RS04295 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.39 ECOLIN_RS25090 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 55
Enterobacter sp. TBS_079 0.43 MPMX20_01436 Ribosomal RNA large subunit methyltransferase F 0.38 MPMX20_00669 Ribosomal RNA small subunit methyltransferase C low > 85
Escherichia coli ECRC99 0.43 KEDOAH_21680 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.39 KEDOAH_16845 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC — —
Escherichia coli ECRC98 0.43 JDDGAC_09865 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.39 JDDGAC_14895 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 87
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_1710 Ribosomal RNA large subunit methyltransferase F (EC 2.1.1.51) 0.29 PfGW456L13_1616 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) low > 87
Escherichia coli ECRC101 0.42 MCAODC_25445 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.39 MCAODC_01815 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 87
Escherichia coli ECRC100 0.42 OKFHMN_06230 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.39 OKFHMN_11300 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 79
Escherichia coli ECRC102 0.42 NIAGMN_04275 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.39 NIAGMN_09150 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 80
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_1085 23S rRNA m(6)A-1618 methyltransferase 0.31 Psyr_0986 16S rRNA m(2)G 1207 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_1085 23S rRNA m(6)A-1618 methyltransferase 0.31 Psyr_0986 16S rRNA m(2)G 1207 methyltransferase low > 86
Pseudomonas lactucae CFBP13502 0.42 GEMAOFIL_01235 Ribosomal RNA large subunit methyltransferase F 0.29 GEMAOFIL_01108 Ribosomal RNA small subunit methyltransferase C — —
Klebsiella pneumoniae MKP103 0.42 KDGMDA_17215 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.35 KDGMDA_12350 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 95
Pseudomonas simiae WCS417 0.42 PS417_05145 23S rRNA methyltransferase 0.29 PS417_04525 16S rRNA methyltransferase low > 88
Pseudomonas orientalis W4I3 0.42 QF045_RS08135 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.29 QF045_RS07495 class I SAM-dependent methyltransferase low > 93
Pseudomonas sp. SVBP6 0.42 COO64_RS04395 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.30 COO64_RS03375 class I SAM-dependent methyltransferase low > 93
Pseudomonas fluorescens SBW25 0.42 PFLU_RS05215 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.29 PFLU_RS04570 class I SAM-dependent methyltransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS05215 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.29 PFLU_RS04570 class I SAM-dependent methyltransferase low > 109
Erwinia tracheiphila SCR3 0.41 LU632_RS09435 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.39 LU632_RS03750 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 73
Erwinia amylovora T8 0.41 OLJFJH_16480 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.38 OLJFJH_01925 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 58
Shewanella oneidensis MR-1 0.41 SO_0134 putative SAM-dependent methyltransferase (RefSeq) 0.29 SO0828 conserved hypothetical protein (NCBI ptt file) low > 76
Erwinia tracheiphila HP pepo 2.2 0.41 IJEDHG_19895 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.39 IJEDHG_05115 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 61
Klebsiella michiganensis M5al 0.41 BWI76_RS08955 23S rRNA (adenine(1618)-N(6))-methyltransferase 0.38 BWI76_RS04080 16S rRNA (guanine(1207)-N(2))-methyltransferase low > 92
Rahnella sp. WP5 0.39 EX31_RS18995 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.35 EX31_RS04120 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 89
Pantoea agglomerans CFBP13505 P0401 0.39 PagCFBP13505_RS04105 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.35 PagCFBP13505_RS08520 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 74
Pantoea sp. MT58 0.38 IAI47_13215 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF 0.35 IAI47_16375 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 76
Shewanella amazonensis SB2B 0.37 Sama_3621 putative SAM-dependent methyltransferase (RefSeq) 0.29 Sama_0569 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) low > 62

Not shown: 10 genomes with orthologs for CSW01_08115 only; 6 genomes with orthologs for CSW01_03280 only