Conservation of cofitness between CSW01_01465 and CSW01_03280 in Vibrio cholerae E7946 ATCC 55056

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01465 ketohydroxyglutarate aldolase 1.0 CSW01_03280 16S rRNA methyltransferase 0.67 18
Pantoea agglomerans CFBP13505 P0401 0.44 PagCFBP13505_RS02380 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.35 PagCFBP13505_RS08520 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 74
Pantoea sp. MT58 0.44 IAI47_08500 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.35 IAI47_16375 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 76
Serratia liquefaciens MT49 0.44 IAI46_23180 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.39 IAI46_02860 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 87
Enterobacter asburiae PDN3 0.44 EX28DRAFT_0706 Entner-Doudoroff aldolase 0.38 EX28DRAFT_3579 16S RNA G1207 methylase RsmC low > 76
Enterobacter sp. TBS_079 0.44 MPMX20_02755 KHG/KDPG aldolase 0.38 MPMX20_00669 Ribosomal RNA small subunit methyltransferase C low > 85
Shewanella oneidensis MR-1 0.44 SO2486 eda 2-deydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (NCBI ptt file) 0.29 SO0828 conserved hypothetical protein (NCBI ptt file) — —
Dickeya dadantii 3937 0.43 DDA3937_RS10140 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.37 DDA3937_RS03190 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 74
Rahnella sp. WP5 0.43 EX31_RS10625 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.35 EX31_RS04120 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 89
Dickeya dianthicola ME23 0.43 DZA65_RS10585 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.36 DZA65_RS03385 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 75
Dickeya dianthicola 67-19 0.43 HGI48_RS10170 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.36 HGI48_RS03340 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 71
Pectobacterium carotovorum WPP14 0.43 HER17_RS11775 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.39 HER17_RS18080 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 75
Shewanella sp. ANA-3 0.43 Shewana3_2148 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (RefSeq) 0.30 Shewana3_3447 16S rRNA m(2)G 1207 methyltransferase (RefSeq) — —
Shewanella loihica PV-4 0.43 Shew_2045 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (RefSeq) 0.32 Shew_3230 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) — —
Shewanella amazonensis SB2B 0.42 Sama_1809 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (RefSeq) 0.29 Sama_0569 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF1629 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) 0.38 GFF1031 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_01879 KHG/KDPG aldolase 0.39 OHPLBJKB_03691 Ribosomal RNA small subunit methyltransferase C low > 74
Escherichia coli BW25113 0.40 b1850 eda keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase (NCBI) 0.39 b4371 rsmC 16S ribosomal RNA m2G1207 methyltransferase (NCBI) low > 76
Escherichia coli ECOR38 0.40 HEPCGN_04750 kdgA bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.39 HEPCGN_09305 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 88
Escherichia coli ECRC62 0.40 BNILDI_15650 kdgA bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.38 BNILDI_07980 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 75
Escherichia coli ECRC101 0.40 MCAODC_19060 kdgA bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.39 MCAODC_01815 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 87
Escherichia coli BL21 0.40 ECD_01821 KHG/KDPG aldolase; 2-dehydro-3-deoxy-phosphogluconate/4-hydroxy-2- oxoglutarate aldolase 0.39 ECD_04246 16S rRNA m(2)G1207 methyltransferase, SAM-dependent — —
Escherichia coli ECRC98 0.40 JDDGAC_00920 kdgA bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.39 JDDGAC_14895 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 87
Escherichia fergusonii Becca 0.40 EFB2_02093 KHG/KDPG aldolase 0.38 EFB2_04076 Ribosomal RNA small subunit methyltransferase C low > 86
Escherichia coli ECRC99 0.40 KEDOAH_01760 kdgA bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.39 KEDOAH_16845 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC — —
Escherichia coli ECRC100 0.40 OKFHMN_26345 kdgA bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.39 OKFHMN_11300 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 79
Escherichia coli ECRC102 0.40 NIAGMN_01715 kdgA bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.39 NIAGMN_09150 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC — —
Escherichia coli Nissle 1917 0.40 ECOLIN_RS10305 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.39 ECOLIN_RS25090 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC — —
Escherichia coli ECOR27 0.39 NOLOHH_16855 kdgA bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.38 NOLOHH_03620 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 76
Erwinia tracheiphila SCR3 0.39 LU632_RS13355 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.39 LU632_RS03750 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 73
Erwinia tracheiphila HP pepo 2.2 0.39 IJEDHG_22200 eda keto-deoxy-phosphogluconate aldolase 0.39 IJEDHG_05115 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 61
Klebsiella pneumoniae MKP103 0.38 KDGMDA_25360 keto-deoxy-phosphogluconate aldolase 0.35 KDGMDA_12350 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC low > 95
Klebsiella michiganensis M5al 0.38 BWI76_RS18095 ketohydroxyglutarate aldolase 0.38 BWI76_RS04080 16S rRNA (guanine(1207)-N(2))-methyltransferase — —
Pseudomonas aeruginosa PA14 0.38 IKLFDK_16165 keto-deoxy-phosphogluconate aldolase 0.31 IKLFDK_00370 Ribosomal RNA small subunit methyltransferase C — —
Pseudomonas aeruginosa MRSN321 0.38 DY961_RS01030 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.31 DY961_RS28955 class I SAM-dependent methyltransferase — —
Pseudomonas aeruginosa PUPa3 0.37 DQ20_RS34505 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.31 DQ20_RS55740 class I SAM-dependent methyltransferase low > 101
Pseudomonas fluorescens FW300-N2C3 0.37 AO356_05150 keto-deoxy-phosphogluconate aldolase 0.29 AO356_06940 16S rRNA methyltransferase — —
Pseudomonas sp. RS175 0.36 PFR28_00575 2-dehydro-3-deoxy-phosphogluconate aldolase 0.30 PFR28_03623 Ribosomal RNA small subunit methyltransferase C — —
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_2883 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) 0.29 Pf6N2E2_3247 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) — —
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_587 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) 0.28 Pf1N1B4_2953 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) — —
Pseudomonas lactucae CFBP13502 0.36 GEMAOFIL_04556 2-dehydro-3-deoxy-phosphogluconate aldolase 0.29 GEMAOFIL_01108 Ribosomal RNA small subunit methyltransferase C — —
Pseudomonas sp. DMC3 0.36 GFF5138 2-dehydro-3-deoxy-phosphogluconate aldolase 0.29 GFF4455 Ribosomal RNA small subunit methyltransferase C — —
Pseudomonas sp. SVBP6 0.36 COO64_RS04600 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.30 COO64_RS03375 class I SAM-dependent methyltransferase low > 93
Pseudomonas fluorescens GW456-L13 0.35 PfGW456L13_1903 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) @ 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) 0.29 PfGW456L13_1616 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) — —
Pseudomonas syringae pv. syringae B728a 0.35 Psyr_1122 2-keto-3-deoxy-phosphogluconate aldolase 0.31 Psyr_0986 16S rRNA m(2)G 1207 methyltransferase — —
Pseudomonas fluorescens SBW25 0.35 PFLU_RS23715 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.29 PFLU_RS04570 class I SAM-dependent methyltransferase — —
Pseudomonas simiae WCS417 0.35 PS417_22100 keto-deoxy-phosphogluconate aldolase 0.29 PS417_04525 16S rRNA methyltransferase — —
Pseudomonas orientalis W4I3 0.35 QF045_RS24235 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.29 QF045_RS07495 class I SAM-dependent methyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS23715 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.29 PFLU_RS04570 class I SAM-dependent methyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.35 Psyr_1122 2-keto-3-deoxy-phosphogluconate aldolase 0.31 Psyr_0986 16S rRNA m(2)G 1207 methyltransferase — —
Pseudomonas sp. BP01 0.35 JOY50_RS11460 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.27 JOY50_RS19445 class I SAM-dependent methyltransferase low > 84
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_03350 keto-deoxy-phosphogluconate aldolase 0.28 AO353_14995 16S rRNA methyltransferase — —
Pseudomonas putida KT2440 0.35 PP_1024 KHG/KDPG aldolase 0.27 PP_0761 Ribosomal RNA small subunit methyltransferase C — —
Pseudomonas segetis P6 0.34 MPMX49_02829 2-dehydro-3-deoxy-phosphogluconate aldolase 0.26 MPMX49_03708 Ribosomal RNA small subunit methyltransferase C — —
Rhizobium sp. OAE497 0.32 ABIE40_RS16720 2-dehydro-3-deoxy-phosphogluconate aldolase 0.13 ABIE40_RS00360 class I SAM-dependent methyltransferase — —
Acinetobacter baumannii LAC-4 0.30 RR41_RS16525 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase 0.27 RR41_RS03295 methyltransferase low > 55

Not shown: 52 genomes with orthologs for CSW01_01465 only; 3 genomes with orthologs for CSW01_03280 only