Conservation of cofitness between CSW01_01710 and CSW01_02515 in Vibrio cholerae E7946 ATCC 55056

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01710 Rsd/AlgQ family anti-sigma factor 1.0 CSW01_02515 transketolase 0.60 9
Shewanella oneidensis MR-1 0.39 SO0433 rsd regulator of sigma D (NCBI ptt file) 0.74 SO0930 tkt transketolase (NCBI ptt file) — —
Shewanella sp. ANA-3 0.38 Shewana3_0434 anti-RNA polymerase sigma 70 factor (RefSeq) 0.75 Shewana3_3353 transketolase (RefSeq) — —
Shewanella loihica PV-4 0.36 Shew_3423 anti-RNA polymerase sigma 70 factor (RefSeq) 0.75 Shew_0752 transketolase (RefSeq) — —
Alteromonas macleodii MIT1002 0.32 MIT1002_03798 Regulator of sigma D 0.74 MIT1002_00861 Transketolase 1 — —
Serratia liquefaciens MT49 0.32 IAI46_01325 Rsd/AlgQ family anti-sigma factor 0.76 IAI46_21045 transketolase — —
Pantoea agglomerans CFBP13505 P0401 0.31 PagCFBP13505_RS22615 Rsd/AlgQ family anti-sigma factor 0.77 PagCFBP13505_RS16020 transketolase low > 74
Pantoea sp. MT58 0.31 IAI47_18080 Rsd/AlgQ family anti-sigma factor 0.77 IAI47_03680 transketolase low > 76
Marinobacter adhaerens HP15 0.30 HP15_221 anti-RNA polymerase sigma 70 factor 0.71 HP15_2913 bacterial transketolase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.29 GFF4197 Regulator of sigma D 0.78 GFF3028 Transketolase (EC 2.2.1.1) low > 78
Escherichia coli ECRC62 0.29 BNILDI_06010 rsd sigma D regulator 0.78 BNILDI_09775 tkt transketolase low > 75
Escherichia coli ECRC101 0.29 MCAODC_03870 rsd sigma D regulator 0.78 MCAODC_09845 tkt transketolase — —
Escherichia coli ECRC102 0.29 NIAGMN_11120 rsd sigma D regulator 0.78 NIAGMN_17090 tkt transketolase low > 80
Escherichia coli ECRC98 0.29 JDDGAC_16995 rsd sigma D regulator 0.78 JDDGAC_22955 tkt transketolase low > 87
Escherichia coli ECRC99 0.29 KEDOAH_14790 rsd sigma D regulator 0.78 KEDOAH_08815 tkt transketolase — —
Escherichia coli ECRC100 0.29 OKFHMN_13370 rsd sigma D regulator 0.78 OKFHMN_19325 tkt transketolase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_04055 Regulator of sigma D 0.78 OHPLBJKB_00781 Transketolase 1 — —
Escherichia coli BL21 0.29 ECD_03872 stationary phase protein, binds sigma 70 RNA polymerase subunit 0.78 ECD_02765 transketolase 1, thiamine triphosphate-binding low > 61
Escherichia coli ECOR38 0.29 HEPCGN_12005 rsd sigma D regulator 0.78 HEPCGN_18630 tkt transketolase low > 88
Escherichia coli BW25113 0.29 b3995 rsd stationary phase protein, binds sigma 70 RNA polymerase subunit (NCBI) 0.78 b2935 tktA transketolase 1, thiamin-binding (NCBI) low > 76
Escherichia coli ECOR27 0.29 NOLOHH_05515 rsd sigma D regulator 0.78 NOLOHH_11230 tkt transketolase low > 76
Enterobacter sp. TBS_079 0.29 MPMX20_00218 Regulator of sigma D 0.78 MPMX20_03780 Transketolase 1 low > 85
Klebsiella pneumoniae MKP103 0.29 KDGMDA_10045 sigma D regulator 0.78 KDGMDA_04465 transketolase — —
Rahnella sp. WP5 0.29 EX31_RS16820 Rsd/AlgQ family anti-sigma factor 0.76 EX31_RS21400 transketolase low > 89
Escherichia fergusonii Becca 0.29 EFB2_04616 Regulator of sigma D 0.78 EFB2_00966 Transketolase 1 low > 86
Escherichia coli Nissle 1917 0.29 ECOLIN_RS23045 sigma D regulator 0.78 ECOLIN_RS16330 transketolase low > 55
Klebsiella michiganensis M5al 0.28 BWI76_RS01560 Rsd/AlgQ family anti-sigma factor 0.78 BWI76_RS24015 transketolase — —
Enterobacter asburiae PDN3 0.27 EX28DRAFT_4537 Regulator of sigma D 0.78 EX28DRAFT_2974 transketolase, bacterial and yeast low > 76
Pectobacterium carotovorum WPP14 0.27 HER17_RS20375 Rsd/AlgQ family anti-sigma factor 0.77 HER17_RS02680 transketolase low > 75
Pseudomonas segetis P6 0.27 MPMX49_04516 Regulator of sigma D 0.72 MPMX49_00653 Transketolase 1 — —
Pseudomonas aeruginosa MRSN321 0.26 DY961_RS12155 rsd;go_process=regulation sigma D regulator 0.71 DY961_RS22760 tkt;go_component=cytoplasm|0005737||IEA;go_function=transketolase transketolase — —
Pseudomonas aeruginosa PA14 0.26 IKLFDK_27180 Alginate regulatory protein AlgQ 0.71 IKLFDK_22685 transketolase — —
Pseudomonas sp. S08-1 0.26 OH686_13925 Alginate regulatory protein AlgQ, positive transcriptional regulator of AlgD 0.73 OH686_10770 transketolase — —
Erwinia tracheiphila SCR3 0.25 LU632_RS00975 Rsd/AlgQ family anti-sigma factor 0.78 LU632_RS05520 tkt transketolase low > 73
Erwinia tracheiphila HP pepo 2.2 0.25 IJEDHG_10890 rsd sigma D regulator 0.78 IJEDHG_03385 tkt transketolase low > 61
Pseudomonas stutzeri RCH2 0.25 Psest_3743 Regulator of sigma D 0.71 Psest_0328 transketolase, bacterial and yeast — —
Pseudomonas sp. DMC3 0.25 GFF353 Regulator of sigma D 0.72 GFF158 Transketolase 1 — —
Erwinia amylovora T8 0.25 OLJFJH_06745 sigma D regulator 0.78 OLJFJH_08645 transketolase low > 58
Pseudomonas fluorescens FW300-N2E2 0.24 Pf6N2E2_4435 Regulator of sigma D 0.71 Pf6N2E2_4655 Transketolase (EC 2.2.1.1) — —
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_12810 transcriptional regulator 0.71 AO356_13680 transketolase — —
Pseudomonas sp. RS175 0.23 PFR28_04361 Regulator of sigma D 0.71 PFR28_04188 Transketolase 1 — —
Pseudomonas fluorescens GW456-L13 0.23 PfGW456L13_861 Regulator of sigma D 0.68 PfGW456L13_1064 Transketolase (EC 2.2.1.1) — —
Pseudomonas fluorescens FW300-N2E3 0.22 AO353_08965 transcriptional regulator 0.71 AO353_07955 transketolase — —
Pseudomonas sp. BP01 0.22 JOY50_RS18725 Rsd/AlgQ family anti-sigma factor 0.71 JOY50_RS09870 tkt transketolase — —
Pseudomonas putida KT2440 0.22 PP_0191 Transcriptional regulatory protein AlgQ 0.72 PP_4965 transketolase A — —
Pseudomonas fluorescens FW300-N1B4 0.22 Pf1N1B4_2190 Regulator of sigma D 0.70 Pf1N1B4_2397 Transketolase (EC 2.2.1.1) — —
Pseudomonas orientalis W4I3 0.21 QF045_RS01865 sigma D regulator 0.71 QF045_RS00840 transketolase — —
Dickeya dianthicola ME23 0.21 DZA65_RS01220 Rsd/AlgQ family anti-sigma factor 0.77 DZA65_RS19585 transketolase — —
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS29185 Rsd/AlgQ family anti-sigma factor 0.71 PFLU_RS28095 transketolase — —
Pseudomonas fluorescens SBW25 0.21 PFLU_RS29185 Rsd/AlgQ family anti-sigma factor 0.71 PFLU_RS28095 transketolase — —
Pseudomonas simiae WCS417 0.21 PS417_27505 transcriptional regulator 0.71 PS417_26440 transketolase — —
Pseudomonas lactucae CFBP13502 0.21 GEMAOFIL_05639 Regulator of sigma D 0.71 GEMAOFIL_05420 Transketolase 1 — —
Pseudomonas sp. SVBP6 0.20 COO64_RS01170 Rsd/AlgQ family anti-sigma factor 0.72 COO64_RS17555 tkt transketolase — —
Dickeya dianthicola 67-19 0.20 HGI48_RS01175 sigma D regulator 0.77 HGI48_RS18450 transketolase — —
Dickeya dadantii 3937 0.20 DDA3937_RS01180 Rsd/AlgQ family anti-sigma factor 0.78 DDA3937_RS18525 transketolase — —

Not shown: 4 genomes with orthologs for CSW01_01710 only; 28 genomes with orthologs for CSW01_02515 only