Conservation of cofitness between CSW01_12260 and CSW01_02500 in Vibrio cholerae E7946 ATCC 55056

51 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12260 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 1.0 CSW01_02500 deoxyribonuclease 0.52 10
Escherichia coli ECOR38 0.62 HEPCGN_08505 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.61 HEPCGN_18590 endA deoxyribonuclease I low > 88
Escherichia coli Nissle 1917 0.62 ECOLIN_RS00590 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.61 ECOLIN_RS16385 deoxyribonuclease I low > 55
Escherichia fergusonii Becca 0.62 EFB2_03939 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.60 EFB2_00957 Endonuclease-1 low > 86
Enterobacter sp. TBS_079 0.62 MPMX20_00801 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.63 MPMX20_03803 Endonuclease-1 low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.61 GFF129 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD 0.61 GFF3047 Endonuclease I precursor (EC 3.1.21.1) @ Extracellular deoxyribonuclease Dns (EC 3.1.21.-) low > 78
Escherichia coli ECRC98 0.61 JDDGAC_14120 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.60 JDDGAC_22915 endA deoxyribonuclease I low > 87
Escherichia coli ECRC102 0.61 NIAGMN_08375 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.60 NIAGMN_17050 endA deoxyribonuclease I low > 80
Erwinia amylovora T8 0.61 OLJFJH_01045 1 6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.59 OLJFJH_08580 deoxyribonuclease I low > 58
Escherichia coli ECRC101 0.61 MCAODC_01040 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.60 MCAODC_09805 endA deoxyribonuclease I low > 88
Escherichia coli ECRC99 0.61 KEDOAH_17630 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.60 KEDOAH_08855 endA deoxyribonuclease I — —
Enterobacter asburiae PDN3 0.61 EX28DRAFT_3703 N-acetylmuramoyl-L-alanine amidase 0.62 EX28DRAFT_2983 Endonuclease I — —
Escherichia coli ECRC100 0.61 OKFHMN_10525 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.60 OKFHMN_19285 endA deoxyribonuclease I low > 79
Escherichia coli ECRC62 0.61 BNILDI_08740 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.61 BNILDI_09735 endA deoxyribonuclease I low > 75
Escherichia coli BW25113 0.61 b0110 ampD N-acetyl-anhydromuranmyl-L-alanine amidase (NCBI) 0.61 b2945 endA DNA-specific endonuclease I (NCBI) 0.21 54
Escherichia coli ECOR27 0.61 NOLOHH_02870 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.61 NOLOHH_11155 endA deoxyribonuclease I low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.61 OHPLBJKB_03551 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.61 OHPLBJKB_00773 Endonuclease-1 low > 74
Escherichia coli BL21 0.61 ECD_00109 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; murein amidase 0.61 ECD_02775 DNA-specific endonuclease I low > 61
Klebsiella michiganensis M5al 0.61 BWI76_RS04850 N-acetylmuramoyl-L-alanine amidase 0.63 BWI76_RS24065 deoxyribonuclease I low > 92
Klebsiella pneumoniae MKP103 0.60 KDGMDA_13085 1 6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.63 KDGMDA_04580 deoxyribonuclease I low > 95
Rahnella sp. WP5 0.59 EX31_RS03510 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.61 EX31_RS02655 deoxyribonuclease I low > 89
Pantoea sp. MT58 0.58 IAI47_15840 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.61 IAI47_03625 deoxyribonuclease I low > 76
Pantoea agglomerans CFBP13505 P0401 0.58 PagCFBP13505_RS13160 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.61 PagCFBP13505_RS16070 deoxyribonuclease I low > 74
Serratia liquefaciens MT49 0.57 IAI46_03535 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.61 IAI46_21380 deoxyribonuclease I low > 86
Dickeya dianthicola 67-19 0.56 HGI48_RS17875 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.61 HGI48_RS18485 deoxyribonuclease I 0.61 18
Pseudomonas segetis P6 0.56 MPMX49_03899 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.45 MPMX49_01589 Nuclease NucM low > 75
Dickeya dianthicola ME23 0.56 DZA65_RS19020 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.62 DZA65_RS19620 deoxyribonuclease I low > 75
Pectobacterium carotovorum WPP14 0.56 HER17_RS03260 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.61 HER17_RS02645 deoxyribonuclease I low > 75
Pseudomonas sp. SVBP6 0.56 COO64_RS03530 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.47 COO64_RS10310 endonuclease — —
Dickeya dadantii 3937 0.56 DDA3937_RS17945 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.61 DDA3937_RS18550 deoxyribonuclease I low > 74
Shewanella sp. ANA-3 0.55 Shewana3_0423 N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) 0.56 Shewana3_3443 endonuclease I (RefSeq) low > 73
Pseudomonas aeruginosa PA14 0.55 IKLFDK_01470 beta-lactamase expression regulator AmpD 0.45 IKLFDK_13855 deoxyribonuclease low > 100
Pseudomonas simiae WCS417 0.53 PS417_03935 N-acetyl-anhydromuranmyl-L-alanine amidase 0.49 PS417_18420 deoxyribonuclease low > 88
Shewanella oneidensis MR-1 0.53 SO0421 ampD AmpD protein (NCBI ptt file) 0.58 SO0833 endA endonuclease I (NCBI ptt file) low > 76
Pseudomonas lactucae CFBP13502 0.53 GEMAOFIL_00991 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.48 GEMAOFIL_03914 Extracellular deoxyribonuclease low > 93
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_1151 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD 0.48 Pf1N1B4_6039 Endonuclease I precursor (EC 3.1.21.1) — —
Pseudomonas sp. RS175 0.53 PFR28_00100 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.48 PFR28_02739 Extracellular deoxyribonuclease low > 88
Pseudomonas sp. S08-1 0.53 OH686_16530 1,6-anhydro-N-acetylmuramyl-L-alanine amidase 0.45 OH686_20125 Endonuclease I precursor low > 80
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS03980 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.49 PFLU_RS20395 deoxyribonuclease low > 109
Pseudomonas fluorescens SBW25 0.53 PFLU_RS03980 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.49 PFLU_RS20395 deoxyribonuclease low > 109
Shewanella amazonensis SB2B 0.53 Sama_0372 N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) 0.55 Sama_0576 deoxyribonuclease I (RefSeq) low > 62
Shewanella loihica PV-4 0.53 Shew_3434 N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) 0.55 Shew_3223 deoxyribonuclease I (RefSeq) low > 60
Pseudomonas sp. DMC3 0.53 GFF4998 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.50 GFF893 Extracellular deoxyribonuclease low > 89
Pseudomonas fluorescens GW456-L13 0.52 PfGW456L13_5081 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD 0.48 PfGW456L13_3916 Endonuclease I precursor (EC 3.1.21.1) — —
Pseudomonas stutzeri RCH2 0.52 Psest_0725 Negative regulator of beta-lactamase expression 0.51 Psest_1274 Endonuclease I low > 67
Pseudomonas syringae pv. syringae B728a ΔmexB 0.52 Psyr_0817 N-acetylmuramoyl-L-alanine amidase, family 2 0.47 Psyr_2148 Deoxyribonuclease I low > 86
Pseudomonas syringae pv. syringae B728a 0.52 Psyr_0817 N-acetylmuramoyl-L-alanine amidase, family 2 0.47 Psyr_2148 Deoxyribonuclease I low > 86
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_07360 N-acetyl-anhydromuranmyl-L-alanine amidase 0.47 AO356_00985 deoxyribonuclease low > 104
Pseudomonas fluorescens FW300-N2E2 0.52 Pf6N2E2_3344 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD 0.48 Pf6N2E2_158 Endonuclease I precursor (EC 3.1.21.1) low > 103
Pseudomonas putida KT2440 0.51 PP_0789 N-acetyl-anhydromuramyl-L-alanine-amidase 0.46 PP_2451 extracellular DNA endonuclease low > 96
Pseudomonas fluorescens FW300-N2E3 0.51 AO353_05510 N-acetyl-anhydromuranmyl-L-alanine amidase 0.48 AO353_20795 deoxyribonuclease low > 101
Pseudomonas sp. BP01 0.51 JOY50_RS19335 ampD 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD 0.47 JOY50_RS04250 endonuclease low > 84

Not shown: 23 genomes with orthologs for CSW01_12260 only; 1 genomes with orthologs for CSW01_02500 only