Conservation of cofitness between CSW01_03280 and CSW01_02450 in Vibrio cholerae E7946 ATCC 55056

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03280 16S rRNA methyltransferase 1.0 CSW01_02450 pyrroline-5-carboxylate reductase 0.80 4
Pectobacterium carotovorum WPP14 0.39 HER17_RS18080 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.69 HER17_RS03805 pyrroline-5-carboxylate reductase — —
Escherichia coli BL21 0.39 ECD_04246 16S rRNA m(2)G1207 methyltransferase, SAM-dependent 0.27 ECD_00333 pyrroline-5-carboxylate reductase, NAD(P)-binding low > 61
Escherichia coli BW25113 0.39 b4371 rsmC 16S ribosomal RNA m2G1207 methyltransferase (NCBI) 0.27 b0386 proC pyrroline-5-carboxylate reductase (NCBI) low > 76
Escherichia coli ECRC98 0.39 JDDGAC_14895 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.27 JDDGAC_12265 proC pyrroline-5-carboxylate reductase low > 87
Escherichia coli Nissle 1917 0.39 ECOLIN_RS25090 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.27 ECOLIN_RS02345 pyrroline-5-carboxylate reductase low > 55
Escherichia coli ECRC102 0.39 NIAGMN_09150 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.27 NIAGMN_06665 proC pyrroline-5-carboxylate reductase low > 80
Serratia liquefaciens MT49 0.39 IAI46_02860 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.69 IAI46_21415 pyrroline-5-carboxylate reductase low > 87
Escherichia coli ECRC101 0.39 MCAODC_01815 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.27 MCAODC_27835 proC pyrroline-5-carboxylate reductase low > 87
Escherichia coli ECRC100 0.39 OKFHMN_11300 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.27 OKFHMN_08610 proC pyrroline-5-carboxylate reductase low > 79
Erwinia tracheiphila HP pepo 2.2 0.39 IJEDHG_05115 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.23 IJEDHG_26195 proC pyrroline-5-carboxylate reductase — —
Erwinia tracheiphila SCR3 0.39 LU632_RS03750 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.23 LU632_RS18995 proC pyrroline-5-carboxylate reductase low > 73
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_03691 Ribosomal RNA small subunit methyltransferase C 0.27 OHPLBJKB_03288 Pyrroline-5-carboxylate reductase low > 74
Escherichia coli ECRC99 0.39 KEDOAH_16845 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.27 KEDOAH_19355 proC pyrroline-5-carboxylate reductase — —
Escherichia coli ECOR38 0.39 HEPCGN_09305 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.27 HEPCGN_07250 proC pyrroline-5-carboxylate reductase low > 88
Erwinia amylovora T8 0.38 OLJFJH_01925 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.26 OLJFJH_18285 pyrroline-5-carboxylate reductase — —
Escherichia coli ECRC62 0.38 BNILDI_07980 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.27 BNILDI_22950 proC pyrroline-5-carboxylate reductase low > 75
Escherichia coli ECOR27 0.38 NOLOHH_03620 rsmC 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.27 NOLOHH_01535 proC pyrroline-5-carboxylate reductase low > 76
Escherichia fergusonii Becca 0.38 EFB2_04076 Ribosomal RNA small subunit methyltransferase C 0.27 EFB2_03670 Pyrroline-5-carboxylate reductase low > 86
Enterobacter sp. TBS_079 0.38 MPMX20_00669 Ribosomal RNA small subunit methyltransferase C 0.27 MPMX20_00976 Pyrroline-5-carboxylate reductase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.38 GFF1031 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) 0.26 GFF4283 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) low > 78
Klebsiella michiganensis M5al 0.38 BWI76_RS04080 16S rRNA (guanine(1207)-N(2))-methyltransferase 0.27 BWI76_RS06170 pyrroline-5-carboxylate reductase — —
Enterobacter asburiae PDN3 0.38 EX28DRAFT_3579 16S RNA G1207 methylase RsmC 0.27 EX28DRAFT_2585 pyrroline-5-carboxylate reductase low > 76
Dickeya dadantii 3937 0.37 DDA3937_RS03190 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.68 DDA3937_RS17305 pyrroline-5-carboxylate reductase low > 74
Dickeya dianthicola ME23 0.36 DZA65_RS03385 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.67 DZA65_RS18440 pyrroline-5-carboxylate reductase — —
Dickeya dianthicola 67-19 0.36 HGI48_RS03340 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.68 HGI48_RS17350 pyrroline-5-carboxylate reductase — —
Rahnella sp. WP5 0.35 EX31_RS04120 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.65 EX31_RS02690 pyrroline-5-carboxylate reductase low > 89
Klebsiella pneumoniae MKP103 0.35 KDGMDA_12350 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.27 KDGMDA_14250 pyrroline-5-carboxylate reductase low > 95
Pantoea sp. MT58 0.35 IAI47_16375 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.26 IAI47_14945 pyrroline-5-carboxylate reductase low > 76
Pantoea agglomerans CFBP13505 P0401 0.35 PagCFBP13505_RS08520 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC 0.26 PagCFBP13505_RS10205 pyrroline-5-carboxylate reductase low > 74
Shewanella loihica PV-4 0.32 Shew_3230 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) 0.52 Shew_1136 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) low > 60
Pseudomonas syringae pv. syringae B728a ΔmexB 0.31 Psyr_0986 16S rRNA m(2)G 1207 methyltransferase 0.36 Psyr_0476 pyrroline-5-carboxylate reductase low > 86
Pseudomonas syringae pv. syringae B728a 0.31 Psyr_0986 16S rRNA m(2)G 1207 methyltransferase 0.36 Psyr_0476 pyrroline-5-carboxylate reductase — —
Pseudomonas aeruginosa MRSN321 0.31 DY961_RS28955 class I SAM-dependent methyltransferase 0.35 DY961_RS21945 proC;go_function=pyrroline-5-carboxylate pyrroline-5-carboxylate reductase low > 100
Pseudomonas aeruginosa PA14 0.31 IKLFDK_00370 Ribosomal RNA small subunit methyltransferase C 0.35 IKLFDK_23455 pyrroline-5-carboxylate reductase low > 98
Pseudomonas aeruginosa PUPa3 0.31 DQ20_RS55740 class I SAM-dependent methyltransferase 0.35 DQ20_RS37355 proC;go_function=pyrroline-5-carboxylate pyrroline-5-carboxylate reductase 0.36 95
Pseudomonas sp. SVBP6 0.30 COO64_RS03375 class I SAM-dependent methyltransferase 0.36 COO64_RS12995 proC pyrroline-5-carboxylate reductase — —
Shewanella sp. ANA-3 0.30 Shewana3_3447 16S rRNA m(2)G 1207 methyltransferase (RefSeq) 0.56 Shewana3_1193 pyrroline-5-carboxylate reductase (RefSeq) low > 73
Pseudomonas sp. RS175 0.30 PFR28_03623 Ribosomal RNA small subunit methyltransferase C 0.35 PFR28_04243 Pyrroline-5-carboxylate reductase — —
Pseudomonas orientalis W4I3 0.29 QF045_RS07495 class I SAM-dependent methyltransferase 0.37 QF045_RS01130 pyrroline-5-carboxylate reductase low > 93
Pseudomonas lactucae CFBP13502 0.29 GEMAOFIL_01108 Ribosomal RNA small subunit methyltransferase C 0.37 GEMAOFIL_05483 Pyrroline-5-carboxylate reductase — —
Pseudomonas simiae WCS417 0.29 PS417_04525 16S rRNA methyltransferase 0.36 PS417_26730 pyrroline-5-carboxylate reductase low > 88
Pseudomonas fluorescens SBW25-INTG 0.29 PFLU_RS04570 class I SAM-dependent methyltransferase 0.37 PFLU_RS28375 pyrroline-5-carboxylate reductase — —
Pseudomonas fluorescens SBW25 0.29 PFLU_RS04570 class I SAM-dependent methyltransferase 0.37 PFLU_RS28375 pyrroline-5-carboxylate reductase — —
Pseudomonas fluorescens FW300-N2C3 0.29 AO356_06940 16S rRNA methyltransferase 0.36 AO356_13420 pyrroline-5-carboxylate reductase — —
Pseudomonas sp. DMC3 0.29 GFF4455 Ribosomal RNA small subunit methyltransferase C 0.34 GFF210 Pyrroline-5-carboxylate reductase — —
Shewanella oneidensis MR-1 0.29 SO0828 conserved hypothetical protein (NCBI ptt file) 0.57 SO3354 proC pyrroline-5-carboxylate reductase (NCBI ptt file) low > 76
Pseudomonas fluorescens FW300-N2E2 0.29 Pf6N2E2_3247 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) 0.35 Pf6N2E2_4600 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) — —
Shewanella amazonensis SB2B 0.29 Sama_0569 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) 0.50 Sama_2478 pyrroline-5-carboxylate reductase (RefSeq) low > 62
Pseudomonas sp. S08-1 0.29 OH686_06345 16S rRNA (guanine(1207)-N(2))-methyltransferase 0.35 OH686_10980 pyrroline-5-carboxylate reductase low > 80
Pseudomonas fluorescens GW456-L13 0.29 PfGW456L13_1616 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) 0.35 PfGW456L13_1010 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) low > 87
Pseudomonas fluorescens FW300-N1B4 0.28 Pf1N1B4_2953 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) 0.35 Pf1N1B4_2341 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) — —
Pseudomonas fluorescens FW300-N2E3 0.28 AO353_14995 16S rRNA methyltransferase 0.36 AO353_08165 pyrroline-5-carboxylate reductase low > 101
Pseudomonas putida KT2440 0.27 PP_0761 Ribosomal RNA small subunit methyltransferase C 0.37 PP_5095 pyrroline-5-carboxylate reductase low > 96
Pseudomonas sp. BP01 0.27 JOY50_RS19445 class I SAM-dependent methyltransferase 0.37 JOY50_RS20905 proC pyrroline-5-carboxylate reductase low > 84
Acinetobacter radioresistens SK82 0.27 MPMX26_02491 Ribosomal RNA small subunit methyltransferase C 0.38 MPMX26_00572 Pyrroline-5-carboxylate reductase low > 36
Acinetobacter baumannii LAC-4 0.27 RR41_RS03295 methyltransferase 0.38 RR41_RS15925 pyrroline-5-carboxylate reductase low > 55
Pseudomonas segetis P6 0.26 ACVTMO_RS18370 methyltransferase 0.36 ACVTMO_RS03015 proC pyrroline-5-carboxylate reductase — —
Rhizobium sp. OAE497 0.13 ABIE40_RS00360 class I SAM-dependent methyltransferase 0.23 ABIE40_RS13005 pyrroline-5-carboxylate reductase low > 107

Not shown: 0 genomes with orthologs for CSW01_03280 only; 62 genomes with orthologs for CSW01_02450 only