Conservation of cofitness between CSW01_09445 and CSW01_02010 in Vibrio cholerae E7946 ATCC 55056

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09445 transcription-repair coupling factor 1.0 CSW01_02010 assimilatory sulfite reductase (NADPH) flavoprotein subunit 0.55 7
Rahnella sp. WP5 0.65 EX31_RS24520 transcription-repair coupling factor 0.51 EX31_RS07905 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.43 87
Escherichia coli ECOR38 0.65 HEPCGN_24015 mfd transcription-repair coupling factor 0.53 HEPCGN_19095 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 88
Serratia liquefaciens MT49 0.64 IAI46_10320 transcription-repair coupling factor 0.52 IAI46_03685 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 87
Escherichia coli BW25113 0.64 b1114 mfd transcription-repair coupling factor (NCBI) 0.53 b2764 cysJ sulfite reductase, alpha subunit, flavoprotein (NCBI) low > 76
Escherichia coli ECRC99 0.64 KEDOAH_24285 mfd transcription-repair coupling factor 0.53 KEDOAH_07755 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit — —
Escherichia coli ECRC100 0.64 OKFHMN_03470 mfd transcription-repair coupling factor 0.53 OKFHMN_20370 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 79
Escherichia coli HS(pFamp)R (ATCC 700891) 0.64 OHPLBJKB_02552 Transcription-repair-coupling factor 0.53 OHPLBJKB_00969 Sulfite reductase [NADPH] flavoprotein alpha-component low > 74
Escherichia coli ECRC98 0.64 JDDGAC_07130 mfd transcription-repair coupling factor 0.53 JDDGAC_24035 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 87
Escherichia coli ECRC101 0.64 MCAODC_22830 mfd transcription-repair coupling factor 0.53 MCAODC_10895 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 87
Escherichia coli ECRC102 0.64 NIAGMN_24360 mfd transcription-repair coupling factor 0.53 NIAGMN_18140 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 80
Escherichia fergusonii Becca 0.64 EFB2_02861 Transcription-repair-coupling factor 0.53 EFB2_01153 Sulfite reductase [NADPH] flavoprotein alpha-component low > 86
Escherichia coli ECOR27 0.64 NOLOHH_20995 mfd transcription-repair coupling factor 0.53 NOLOHH_12185 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 76
Escherichia coli ECRC62 0.64 BNILDI_19160 mfd transcription-repair coupling factor 0.53 BNILDI_10735 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 75
Escherichia coli BL21 0.64 ECD_01110 transcription-repair coupling factor 0.53 ECD_02609 sulfite reductase, alpha subunit, flavoprotein low > 61
Pectobacterium carotovorum WPP14 0.64 HER17_RS08775 transcription-repair coupling factor 0.52 HER17_RS04235 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 75
Pantoea sp. MT58 0.64 IAI47_11975 transcription-repair coupling factor 0.51 IAI47_04150 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF3397 Transcription-repair coupling factor 0.53 GFF4820 Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) low > 78
Enterobacter asburiae PDN3 0.64 EX28DRAFT_1816 transcription-repair coupling factor (mfd) 0.53 EX28DRAFT_2853 sulfite reductase [NADPH] flavoprotein, alpha-component low > 76
Klebsiella michiganensis M5al 0.64 BWI76_RS11205 transcription-repair coupling factor 0.52 BWI76_RS22765 sulfite reductase subunit alpha low > 92
Enterobacter sp. TBS_079 0.64 MPMX20_01795 Transcription-repair-coupling factor 0.51 MPMX20_03643 Sulfite reductase [NADPH] flavoprotein alpha-component low > 85
Dickeya dadantii 3937 0.64 DDA3937_RS13000 transcription-repair coupling factor 0.52 DDA3937_RS16945 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 74
Erwinia amylovora T8 0.64 OLJFJH_15445 transcription-repair coupling factor 0.49 OLJFJH_09300 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 58
Pantoea agglomerans CFBP13505 P0401 0.64 PagCFBP13505_RS19410 transcription-repair coupling factor 0.51 PagCFBP13505_RS16815 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 74
Dickeya dianthicola 67-19 0.64 HGI48_RS13065 transcription-repair coupling factor 0.52 HGI48_RS17015 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 71
Dickeya dianthicola ME23 0.63 DZA65_RS13530 transcription-repair coupling factor 0.52 DZA65_RS18090 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 75
Erwinia tracheiphila SCR3 0.63 LU632_RS14730 mfd transcription-repair coupling factor 0.51 LU632_RS06400 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 73
Klebsiella pneumoniae MKP103 0.63 KDGMDA_18800 transcription-repair coupling factor 0.52 KDGMDA_03300 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 95
Erwinia tracheiphila HP pepo 2.2 0.63 IJEDHG_00560 mfd transcription-repair coupling factor 0.51 IJEDHG_17420 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit low > 61
Shewanella loihica PV-4 0.58 Shew_1630 transcription-repair coupling factor (RefSeq) 0.49 Shew_0665 sulfite reductase (NADPH) flavoprotein, alpha chain (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.57 MIT1002_01646 Transcription-repair-coupling factor 0.51 MIT1002_03380 Sulfite reductase [NADPH] flavoprotein alpha-component — —
Shewanella oneidensis MR-1 0.56 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) 0.50 SO3738 cysJ sulfite reductase (NADPH) flavoprotein alpha-component (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.56 Shewana3_2289 transcription-repair coupling factor (RefSeq) 0.48 Shewana3_0855 sulfite reductase (NADPH) alpha subunit (RefSeq) low > 73
Pseudomonas stutzeri RCH2 0.55 Psest_1653 transcription-repair coupling factor (mfd) 0.14 Psest_3345 Sulfite reductase, alpha subunit (flavoprotein) low > 67
Shewanella amazonensis SB2B 0.55 Sama_1330 transcription-repair coupling factor (RefSeq) 0.50 Sama_2839 sulfite reductase subunit alpha (RefSeq) low > 62
Pseudomonas orientalis W4I3 0.53 QF045_RS10280 transcription-repair coupling factor 0.18 QF045_RS15700 sulfite reductase flavoprotein subunit alpha low > 93
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_1800 transcription-repair coupling factor 0.40 B158DRAFT_2160 sulfite reductase (NADPH) alpha subunit (EC 1.8.1.2) low > 40
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS02040 transcription-repair coupling factor 0.38 LRK54_RS00930 assimilatory sulfite reductase (NADPH) flavoprotein subunit low > 59
Dyella japonica UNC79MFTsu3.2 0.49 ABZR86_RS21210 transcription-repair coupling factor 0.38 ABZR86_RS05905 assimilatory sulfite reductase (NADPH) flavoprotein subunit low > 74
Rhodanobacter denitrificans MT42 0.49 LRK55_RS01815 transcription-repair coupling factor 0.38 LRK55_RS00705 assimilatory sulfite reductase (NADPH) flavoprotein subunit low > 63
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_09105 mfd transcription-repair coupling factor 0.38 OKGIIK_05960 assimilatory sulfite reductase (NADPH) flavoprotein subunit low > 53
Lysobacter sp. OAE881 0.49 ABIE51_RS14320 transcription-repair coupling factor 0.42 ABIE51_RS15825 assimilatory sulfite reductase (NADPH) flavoprotein subunit 0.58 21
Rhodanobacter sp000427505 FW510-R12 0.49 LRK53_RS08005 transcription-repair coupling factor 0.39 LRK53_RS09180 assimilatory sulfite reductase (NADPH) flavoprotein subunit low > 59
Xanthomonas campestris pv. campestris strain 8004 0.47 Xcc-8004.1775.1 Transcription-repair coupling factor 0.37 Xcc-8004.1258.1 Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) low > 74
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS07845 transcription-repair coupling factor 0.15 RR42_RS37040 sulfite reductase subunit alpha low > 128
Castellaniella sp019104865 MT123 0.43 ABCV34_RS08660 transcription-repair coupling factor 0.38 ABCV34_RS00220 assimilatory sulfite reductase (NADPH) flavoprotein subunit low > 48
Caulobacter crescentus NA1000 0.32 CCNA_01920 transcription-repair coupling factor Mfd 0.16 CCNA_03159 sulfite reductase (NADPH) flavoprotein alpha-component low > 66
Caulobacter crescentus NA1000 Δfur 0.32 CCNA_01920 transcription-repair coupling factor Mfd 0.16 CCNA_03159 sulfite reductase (NADPH) flavoprotein alpha-component low > 67
Agrobacterium fabrum C58 0.32 Atu1778 transcription-repair coupling factor 0.35 Atu0146 sulfite reductase (NADPH) flavoprotein alpha-component low > 89

Not shown: 60 genomes with orthologs for CSW01_09445 only; 1 genomes with orthologs for CSW01_02010 only