Conservation of cofitness between CSW01_13810 and CSW01_01485 in Vibrio cholerae E7946 ATCC 55056

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_13810 phosphoenolpyruvate carboxykinase (ATP) 1.0 CSW01_01485 transcriptional regulator 0.97 1
Dickeya dadantii 3937 0.81 DDA3937_RS19610 phosphoenolpyruvate carboxykinase (ATP) 0.55 DDA3937_RS19785 gluconate operon transcriptional repressor GntR low > 74
Escherichia fergusonii Becca 0.81 EFB2_00425 Phosphoenolpyruvate carboxykinase (ATP) 0.52 EFB2_00382 HTH-type transcriptional regulator GntR low > 86
Escherichia coli ECOR38 0.81 HEPCGN_15865 pckA phosphoenolpyruvate carboxykinase (ATP) 0.52 HEPCGN_15660 gntR gluconate operon transcriptional repressor GntR low > 88
Escherichia coli BW25113 0.81 b3403 pck phosphoenolpyruvate carboxykinase (NCBI) 0.52 b3438 gntR DNA-binding transcriptional repressor (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.81 OHPLBJKB_00300 Phosphoenolpyruvate carboxykinase (ATP) 0.52 OHPLBJKB_00264 HTH-type transcriptional regulator GntR low > 74
Escherichia coli BL21 0.81 ECD_03255 phosphoenolpyruvate carboxykinase [ATP] 0.51 ECD_03289 d-gluconate inducible gluconate regulon transcriptional repressor low > 61
Escherichia coli ECOR27 0.81 NOLOHH_08835 pckA phosphoenolpyruvate carboxykinase (ATP) 0.51 NOLOHH_08635 gntR gluconate operon transcriptional repressor GntR low > 76
Escherichia coli ECRC62 0.81 BNILDI_02685 pckA phosphoenolpyruvate carboxykinase (ATP) 0.52 BNILDI_02870 gntR gluconate operon transcriptional repressor GntR low > 75
Escherichia coli Nissle 1917 0.81 ECOLIN_RS19435 phosphoenolpyruvate carboxykinase (ATP) 0.52 ECOLIN_RS19675 gluconate operon transcriptional repressor GntR low > 55
Escherichia coli ECRC98 0.81 JDDGAC_20675 pckA phosphoenolpyruvate carboxykinase (ATP) 0.52 JDDGAC_20465 gntR gluconate operon transcriptional repressor GntR low > 87
Escherichia coli ECRC99 0.81 KEDOAH_11095 pckA phosphoenolpyruvate carboxykinase (ATP) 0.52 KEDOAH_11305 gntR gluconate operon transcriptional repressor GntR — —
Escherichia coli ECRC100 0.81 OKFHMN_17045 pckA phosphoenolpyruvate carboxykinase (ATP) 0.52 OKFHMN_16835 gntR gluconate operon transcriptional repressor GntR low > 79
Escherichia coli ECRC102 0.81 NIAGMN_14815 pckA phosphoenolpyruvate carboxykinase (ATP) 0.52 NIAGMN_14605 gntR gluconate operon transcriptional repressor GntR low > 80
Escherichia coli ECRC101 0.81 MCAODC_07575 pckA phosphoenolpyruvate carboxykinase (ATP) 0.52 MCAODC_07365 gntR gluconate operon transcriptional repressor GntR low > 88
Dickeya dianthicola ME23 0.81 DZA65_RS20830 phosphoenolpyruvate carboxykinase (ATP) 0.55 DZA65_RS20970 gluconate operon transcriptional repressor GntR low > 75
Serratia liquefaciens MT49 0.81 IAI46_23770 phosphoenolpyruvate carboxykinase (ATP) 0.54 IAI46_23965 gluconate operon transcriptional repressor GntR low > 86
Dickeya dianthicola 67-19 0.81 HGI48_RS19740 phosphoenolpyruvate carboxykinase (ATP) 0.55 HGI48_RS19900 gluconate operon transcriptional repressor GntR low > 71
Klebsiella pneumoniae MKP103 0.81 KDGMDA_06970 phosphoenolpyruvate carboxykinase (ATP) 0.51 KDGMDA_07120 gluconate operon transcriptional repressor GntR low > 95
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.81 GFF615 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.49 GFF570 Gluconate utilization system Gnt-I transcriptional repressor 0.33 69
Pectobacterium carotovorum WPP14 0.80 HER17_RS01710 phosphoenolpyruvate carboxykinase (ATP) 0.52 HER17_RS01450 gluconate operon transcriptional repressor GntR low > 75
Enterobacter asburiae PDN3 0.79 EX28DRAFT_4140 phosphoenolpyruvate carboxykinase (ATP) 0.51 EX28DRAFT_4274 transcriptional regulator, LacI family low > 76
Klebsiella michiganensis M5al 0.79 BWI76_RS26155 phosphoenolpyruvate carboxykinase (ATP) 0.51 BWI76_RS26245 transcriptional regulator low > 92
Enterobacter sp. TBS_079 0.79 MPMX20_04290 Phosphoenolpyruvate carboxykinase (ATP) 0.52 MPMX20_04319 HTH-type transcriptional regulator GntR low > 85
Rahnella sp. WP5 0.79 EX31_RS04780 phosphoenolpyruvate carboxykinase (ATP) 0.54 EX31_RS05060 gluconate operon transcriptional repressor GntR low > 89
Erwinia tracheiphila HP pepo 2.2 0.78 IJEDHG_11970 pckA phosphoenolpyruvate carboxykinase (ATP) 0.54 IJEDHG_08040 gntR gluconate operon transcriptional repressor GntR low > 61
Erwinia amylovora T8 0.78 OLJFJH_04150 phosphoenolpyruvate carboxykinase (ATP) 0.56 OLJFJH_04280 gluconate operon transcriptional repressor GntR low > 58
Erwinia tracheiphila SCR3 0.78 LU632_RS22930 pckA phosphoenolpyruvate carboxykinase (ATP) 0.53 LU632_RS19160 gntR gluconate operon transcriptional repressor GntR low > 74
Pantoea sp. MT58 0.77 IAI47_01830 phosphoenolpyruvate carboxykinase (ATP) 0.52 IAI47_01650 gluconate operon transcriptional repressor GntR low > 76
Pantoea agglomerans CFBP13505 P0401 0.77 PagCFBP13505_RS18350 phosphoenolpyruvate carboxykinase (ATP) 0.50 PagCFBP13505_RS18155 gluconate operon transcriptional repressor GntR low > 74
Agrobacterium fabrum C58 0.42 Atu0035 phosphoenolpyruvate carboxykinase 0.28 Atu4685 LacI family transcriptional regulator low > 89
Sinorhizobium meliloti 1021 0.41 SMc02562 phosphoenolpyruvate carboxykinase 0.29 SM_b20667 LacI family transcriptional regulator low > 103
Xanthobacter sp. DMC5 0.40 GFF4136 Phosphoenolpyruvate carboxykinase (ATP) 0.31 GFF1533 HTH-type transcriptional regulator GntR — —
Rhizobium sp. OAE497 0.40 ABIE40_RS19415 phosphoenolpyruvate carboxykinase 0.25 ABIE40_RS04445 LacI family DNA-binding transcriptional regulator low > 107
Phaeobacter inhibens DSM 17395 0.39 PGA1_c01140 phosphoenolpyruvate carboxykinase 0.28 PGA1_c33870 putative HTH-type transcriptional regulator GntR 0.56 57
Dinoroseobacter shibae DFL-12 0.39 Dshi_0213 Phosphoenolpyruvate carboxykinase (ATP) (RefSeq) 0.27 Dshi_3322 transcriptional regulator, LacI family (RefSeq) 0.64 11
Alteromonas macleodii MIT1002 0.36 MIT1002_03972 Phosphoenolpyruvate carboxykinase [ATP] 0.31 MIT1002_03475 Gluconate utilization system GNT-I transcriptional repressor low > 70
Pseudomonas lactucae CFBP13502 0.35 GEMAOFIL_00469 Phosphoenolpyruvate carboxykinase (ATP) 0.34 GEMAOFIL_04536 HTH-type transcriptional regulator GntR low > 93
Pseudomonas simiae WCS417 0.34 PS417_01210 hypothetical protein 0.33 PS417_21990 LacI family transcriptional regulator low > 88
Pseudomonas fluorescens FW300-N1B4 0.34 Pf1N1B4_1779 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.35 Pf1N1B4_558 Gluconate utilization system Gnt-I transcriptional repressor — —
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS01320 phosphoenolpyruvate carboxykinase 0.34 PFLU_RS23595 LacI family DNA-binding transcriptional regulator 0.25 83
Pseudomonas fluorescens SBW25 0.34 PFLU_RS01320 phosphoenolpyruvate carboxykinase 0.34 PFLU_RS23595 LacI family DNA-binding transcriptional regulator low > 109
Pseudomonas sp. RS175 0.34 PFR28_04874 Phosphoenolpyruvate carboxykinase (ATP) 0.34 PFR28_00593 HTH-type transcriptional regulator GntR low > 88
Pseudomonas aeruginosa PA14 0.34 IKLFDK_27515 phosphoenolpyruvate carboxykinase 0.36 IKLFDK_11375 LacI family DNA-binding transcriptional regulator GntR low > 100
Pseudomonas sp. SVBP6 0.33 COO64_RS00660 phosphoenolpyruvate carboxykinase 0.34 COO64_RS25590 LacI family DNA-binding transcriptional regulator low > 93
Pseudomonas sp. BP01 0.33 JOY50_RS18315 phosphoenolpyruvate carboxykinase 0.31 JOY50_RS23605 LacI family DNA-binding transcriptional regulator low > 84
Pseudomonas syringae pv. syringae B728a 0.33 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) 0.32 Psyr_3336 transcriptional regulator, LacI family low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.33 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) 0.32 Psyr_3336 transcriptional regulator, LacI family low > 86
Pseudomonas sp. DMC3 0.33 GFF4175 Phosphoenolpyruvate carboxykinase (ATP) 0.33 GFF5268 HTH-type transcriptional regulator GntR low > 89
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_420 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.34 PfGW456L13_1925 Gluconate utilization system Gnt-I transcriptional repressor low > 87
Pseudomonas stutzeri RCH2 0.33 Psest_3988 phosphoenolpyruvate carboxykinase (ATP) 0.34 Psest_2126 Transcriptional regulators low > 67
Pseudomonas fluorescens FW300-N2E3 0.33 AO353_11775 phosphoenolpyruvate carboxykinase [ATP] 0.33 AO353_03255 LacI family transcriptional regulator low > 101
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_10140 phosphoenolpyruvate carboxykinase [ATP] 0.34 AO356_05065 LacI family transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N2E2 0.32 Pf6N2E2_3899 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 0.34 Pf6N2E2_2865 Gluconate utilization system Gnt-I transcriptional repressor low > 103
Pseudomonas segetis P6 0.32 MPMX49_00777 Phosphoenolpyruvate carboxykinase (ATP) 0.33 MPMX49_02373 HTH-type transcriptional regulator GntR low > 75

Not shown: 22 genomes with orthologs for CSW01_13810 only; 18 genomes with orthologs for CSW01_01485 only