Conservation of cofitness between CSW01_07810 and CSW01_00655 in Vibrio cholerae E7946 ATCC 55056

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07810 glycerophosphoryl diester phosphodiesterase 1.0 CSW01_00655 2-haloalkanoic acid dehalogenase 0.71 3
Herbaspirillum seropedicae SmR1 0.24 HSERO_RS18050 glycerophosphodiester phosphodiesterase 0.20 HSERO_RS03050 hydrolase low > 78
Pseudomonas syringae pv. syringae B728a 0.23 Psyr_4506 Glycerophosphodiester phosphodiesterase 0.27 Psyr_0186 HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.23 Psyr_4506 Glycerophosphodiester phosphodiesterase 0.27 Psyr_0186 HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1 low > 86
Pantoea sp. MT58 0.23 IAI47_01610 glycerophosphodiester phosphodiesterase 0.43 IAI47_18395 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB low > 76
Pantoea agglomerans CFBP13505 P0401 0.23 PagCFBP13505_RS18125 glycerophosphodiester phosphodiesterase 0.42 PagCFBP13505_RS15375 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB low > 74
Dickeya dianthicola ME23 0.22 DZA65_RS11295 glycerophosphoryl diester phosphodiesterase 0.37 DZA65_RS21085 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB — —
Erwinia amylovora T8 0.22 OLJFJH_04310 glycerophosphodiester phosphodiesterase 0.44 OLJFJH_06420 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB low > 58
Rahnella sp. WP5 0.22 EX31_RS14740 glycerophosphodiester phosphodiesterase 0.39 EX31_RS15170 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB low > 89
Serratia liquefaciens MT49 0.22 IAI46_01010 glycerophosphodiester phosphodiesterase 0.43 IAI46_00730 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB low > 87
Dickeya dianthicola 67-19 0.21 HGI48_RS10830 glycerophosphoryl diester phosphodiesterase 0.37 HGI48_RS20040 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB — —
Pectobacterium carotovorum WPP14 0.21 HER17_RS00630 glycerophosphodiester phosphodiesterase 0.42 HER17_RS01355 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB low > 75
Escherichia coli BW25113 0.20 b3449 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase (NCBI) 0.42 b3812 yigB predicted hydrolase (NCBI) low > 76
Klebsiella michiganensis M5al 0.20 BWI76_RS26285 glycerophosphodiester phosphodiesterase 0.45 BWI76_RS01215 flavin mononucleotide phosphatase — —
Enterobacter asburiae PDN3 0.20 EX28DRAFT_4281 Glycerophosphoryl diester phosphodiesterase 0.43 EX28DRAFT_4481 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E low > 76
Escherichia coli BL21 0.20 ECD_03298 glycerophosphodiester phosphodiesterase, cytosolic 0.42 ECD_03688 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis low > 61
Shewanella loihica PV-4 0.20 Shew_0554 glycerophosphoryl diester phosphodiesterase (RefSeq) 0.35 Shew_0326 HAD family hydrolase (RefSeq) low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.20 OHPLBJKB_00254 Glycerophosphodiester phosphodiesterase, cytoplasmic 0.42 OHPLBJKB_04238 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB low > 74
Escherichia coli ECRC98 0.20 JDDGAC_20420 ugpQ glycerophosphodiester phosphodiesterase 0.42 JDDGAC_18040 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB 0.45 27
Escherichia coli ECRC102 0.20 NIAGMN_14560 ugpQ glycerophosphodiester phosphodiesterase 0.42 NIAGMN_12170 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB low > 80
Escherichia coli ECRC100 0.20 OKFHMN_16790 ugpQ glycerophosphodiester phosphodiesterase 0.42 OKFHMN_14415 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB low > 79
Escherichia coli ECRC99 0.20 KEDOAH_11350 ugpQ glycerophosphodiester phosphodiesterase 0.42 KEDOAH_13735 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB — —
Shewanella sp. ANA-3 0.20 Shewana3_0585 glycerophosphoryl diester phosphodiesterase (RefSeq) 0.31 Shewana3_0394 HAD family hydrolase (RefSeq) low > 73
Escherichia coli ECRC101 0.20 MCAODC_07320 ugpQ glycerophosphodiester phosphodiesterase 0.42 MCAODC_04920 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB low > 87
Escherichia fergusonii Becca 0.20 EFB2_00373 Glycerophosphodiester phosphodiesterase, cytoplasmic 0.42 EFB2_04825 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB low > 86
Klebsiella pneumoniae MKP103 0.19 KDGMDA_07160 glycerophosphodiester phosphodiesterase 0.43 KDGMDA_09705 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB low > 95
Escherichia coli ECOR27 0.19 NOLOHH_08580 ugpQ glycerophosphodiester phosphodiesterase 0.42 NOLOHH_06545 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB low > 76
Shewanella oneidensis MR-1 0.19 SO0587 glycerophosphoryl diester phosphodiesterase, putative (NCBI ptt file) 0.32 SO4305 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein (NCBI ptt file) low > 76
Escherichia coli ECRC62 0.19 BNILDI_02925 ugpQ glycerophosphodiester phosphodiesterase 0.42 BNILDI_04990 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB low > 75
Escherichia coli ECOR38 0.19 HEPCGN_15610 ugpQ glycerophosphodiester phosphodiesterase 0.42 HEPCGN_13120 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB low > 88
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.19 GFF559 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) 0.43 GFF240 'Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase' transl_table=11 low > 78
Escherichia coli Nissle 1917 0.19 ECOLIN_RS19725 glycerophosphodiester phosphodiesterase 0.42 ECOLIN_RS21880 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB low > 55
Pseudomonas segetis P6 0.19 ACVTMO_RS06145 glycerophosphodiester phosphodiesterase 0.26 ACVTMO_RS22530 HAD family hydrolase low > 75
Enterobacter sp. TBS_079 0.18 MPMX20_04325 Glycerophosphodiester phosphodiesterase, cytoplasmic 0.42 MPMX20_04464 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB low > 85
Erwinia tracheiphila HP pepo 2.2 0.17 IJEDHG_07970 ugpQ glycerophosphodiester phosphodiesterase 0.45 IJEDHG_08775 yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB low > 61
Alteromonas macleodii MIT1002 0.17 MIT1002_00492 Glycerophosphoryl diester phosphodiesterase 0.28 MIT1002_00156 Flavin mononucleotide phosphatase YigB low > 70
Hydrogenophaga sp. GW460-11-11-14-LB1 0.17 GFF1263 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) 0.19 GFF5114 Hydrolase — —
Pseudomonas putida KT2440 0.17 PP_2152 glycerophosphoryl diester phosphodiesterase 0.28 PP_5231 putative (S)-2-haloacid dehalogenase low > 96
Pseudomonas sp. DMC3 0.17 GFF1290 Glycerophosphodiester phosphodiesterase, cytoplasmic 0.29 GFF371 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB low > 89
Shewanella amazonensis SB2B 0.17 Sama_3037 glycerophosphoryl diester phosphodiesterase (RefSeq) 0.32 Sama_3246 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein (RefSeq) low > 62
Pseudomonas fluorescens FW300-N1B4 0.17 Pf1N1B4_3920 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) 0.28 Pf1N1B4_2170 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase low > 87
Acidovorax sp. GW101-3H11 0.16 Ac3H11_4784 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) 0.22 Ac3H11_108 Hydrolase low > 79
Pseudomonas sp. BP01 0.16 JOY50_RS25120 glycerophosphodiester phosphodiesterase 0.29 JOY50_RS22615 HAD family hydrolase low > 84
Pseudomonas lactucae CFBP13502 0.16 GEMAOFIL_01663 Glycerophosphodiester phosphodiesterase, cytoplasmic 0.31 GEMAOFIL_05658 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB low > 96
Pseudomonas simiae WCS417 0.16 PS417_07655 glycerophosphodiester phosphodiesterase 0.30 PS417_27600 HAD family hydrolase low > 88
Pseudomonas fluorescens SBW25 0.16 PFLU_RS07730 glycerophosphodiester phosphodiesterase 0.31 PFLU_RS29285 HAD-IA family hydrolase low > 109
Pseudomonas fluorescens SBW25-INTG 0.16 PFLU_RS07730 glycerophosphodiester phosphodiesterase 0.31 PFLU_RS29285 HAD-IA family hydrolase low > 109
Pseudomonas orientalis W4I3 0.16 QF045_RS10300 glycerophosphodiester phosphodiesterase family protein 0.30 QF045_RS01965 HAD-IA family hydrolase low > 93
Pseudomonas fluorescens FW300-N2E3 0.16 AO353_00385 glycerophosphodiester phosphodiesterase 0.28 AO353_09055 HAD family hydrolase low > 101
Pseudomonas sp. S08-1 0.16 OH686_22010 Glycerophosphoryl diester phosphodiesterase 0.26 OH686_13780 2-haloalkanoic acid dehalogenase low > 80
Variovorax sp. SCN45 0.16 GFF2533 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) 0.22 GFF502 Hydrolase low > 127
Pseudomonas stutzeri RCH2 0.15 Psest_1664 Glycerophosphoryl diester phosphodiesterase 0.26 Psest_3768 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E low > 67
Variovorax sp. OAS795 0.15 ABID97_RS21135 glycerophosphodiester phosphodiesterase 0.21 ABID97_RS17655 HAD-IA family hydrolase low > 91

Not shown: 25 genomes with orthologs for CSW01_07810 only; 17 genomes with orthologs for CSW01_00655 only