Conservation of cofitness between CSW01_09380 and CSW01_00395 in Vibrio cholerae E7946 ATCC 55056

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09380 PrkA family serine protein kinase 1.0 CSW01_00395 ribosomal RNA small subunit methyltransferase J 0.43 16
Shewanella amazonensis SB2B 0.88 Sama_1921 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) 0.61 Sama_3564 hypothetical protein (RefSeq) low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.88 GFF3473 Serine protein kinase (prkA protein), P-loop containing 0.55 GFF518 rRNA small subunit methyltransferase J low > 78
Escherichia coli ECRC101 0.88 MCAODC_18700 yeaG protein kinase YeaG 0.55 MCAODC_06935 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 87
Escherichia coli ECRC98 0.88 JDDGAC_01285 yeaG protein kinase YeaG 0.55 JDDGAC_20050 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 87
Escherichia coli ECRC100 0.88 OKFHMN_26710 yeaG protein kinase YeaG 0.55 OKFHMN_16420 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 79
Escherichia coli ECOR38 0.88 HEPCGN_05100 yeaG protein kinase YeaG 0.55 HEPCGN_15330 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 88
Escherichia coli ECRC62 0.88 BNILDI_16025 yeaG protein kinase YeaG 0.55 BNILDI_03205 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 75
Escherichia coli ECRC102 0.88 NIAGMN_01355 yeaG protein kinase YeaG 0.55 NIAGMN_14185 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.88 OHPLBJKB_01949 hypothetical protein 0.55 OHPLBJKB_00206 Ribosomal RNA small subunit methyltransferase J low > 74
Escherichia coli ECRC99 0.88 KEDOAH_01400 yeaG protein kinase YeaG 0.55 KEDOAH_11725 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ — —
Escherichia coli BW25113 0.88 b1783 yeaG yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) 0.55 b3497 yhiQ predicted SAM-dependent methyltransferase (NCBI) low > 76
Escherichia fergusonii Becca 0.88 EFB2_02211 hypothetical protein 0.55 EFB2_00318 Ribosomal RNA small subunit methyltransferase J low > 86
Escherichia coli ECOR27 0.88 NOLOHH_17240 yeaG protein kinase YeaG 0.55 NOLOHH_08355 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 76
Escherichia coli Nissle 1917 0.88 ECOLIN_RS09940 protein kinase YeaG 0.55 ECOLIN_RS19980 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 55
Enterobacter asburiae PDN3 0.87 EX28DRAFT_1776 putative serine protein kinase, PrkA 0.55 EX28DRAFT_4064 Putative SAM-dependent methyltransferase low > 76
Klebsiella pneumoniae MKP103 0.87 KDGMDA_19160 protein kinase YeaG 0.55 KDGMDA_07420 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 95
Shewanella sp. ANA-3 0.87 Shewana3_1638 putative serine protein kinase, PrkA (RefSeq) 0.60 Shewana3_4037 hypothetical protein (RefSeq) low > 73
Serratia liquefaciens MT49 0.87 IAI46_14375 protein kinase YeaG 0.56 IAI46_24205 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 87
Shewanella loihica PV-4 0.87 Shew_1833 putative serine protein kinase, PrkA (RefSeq) 0.58 Shew_3647 hypothetical protein (RefSeq) low > 60
Enterobacter sp. TBS_079 0.87 MPMX20_01840 hypothetical protein 0.53 MPMX20_04396 Ribosomal RNA small subunit methyltransferase J low > 85
Klebsiella michiganensis M5al 0.87 BWI76_RS11485 serine protein kinase PrkA 0.50 BWI76_RS26605 16S rRNA (guanine(1516)-N(2))-methyltransferase low > 92
Pectobacterium carotovorum WPP14 0.87 HER17_RS11150 protein kinase YeaG 0.54 HER17_RS21305 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 75
Erwinia tracheiphila SCR3 0.86 LU632_RS13010 yeaG PrkA family serine protein kinase 0.53 LU632_RS19465 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 73
Erwinia tracheiphila HP pepo 2.2 0.86 IJEDHG_22600 yeaG protein kinase YeaG 0.53 IJEDHG_12595 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 61
Pantoea sp. MT58 0.86 IAI47_08925 protein kinase YeaG 0.52 IAI47_01350 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 76
Pantoea agglomerans CFBP13505 P0401 0.86 PagCFBP13505_RS02760 PrkA family serine protein kinase 0.52 PagCFBP13505_RS17850 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 74
Erwinia amylovora T8 0.86 OLJFJH_13200 protein kinase YeaG 0.54 OLJFJH_04525 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 58
Rahnella sp. WP5 0.86 EX31_RS06260 protein kinase YeaG 0.56 EX31_RS05160 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 89
Dickeya dadantii 3937 0.86 DDA3937_RS10245 PrkA family serine protein kinase 0.54 DDA3937_RS21270 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 74
Dickeya dianthicola ME23 0.86 DZA65_RS10730 PrkA family serine protein kinase 0.50 DZA65_RS00030 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 75
Alteromonas macleodii MIT1002 0.85 MIT1002_01233 PrkA family serine protein kinase 0.38 MIT1002_00112 Ribosomal RNA small subunit methyltransferase J low > 70
Dickeya dianthicola 67-19 0.85 HGI48_RS10255 PrkA family serine protein kinase 0.50 HGI48_RS00040 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 71
Escherichia coli BL21 0.83 ECD_01752 protein kinase, endogenous substrate unidentified; autokinase 0.55 ECD_03346 16S rRNA m(2)G1516 methyltransferase, SAM-dependent low > 61
Pseudomonas putida KT2440 0.80 PP_0397 protein kinase 0.39 PP_1513 Ribosomal RNA small subunit methyltransferase J low > 96
Pseudomonas sp. BP01 0.80 JOY50_RS18120 PrkA family serine protein kinase 0.39 JOY50_RS26070 class I SAM-dependent methyltransferase low > 84
Pseudomonas syringae pv. syringae B728a ΔmexB 0.79 Psyr_4631 PrkA serine kinase 0.42 Psyr_1325 Protein of unknown function DUF548 low > 86
Pseudomonas syringae pv. syringae B728a 0.79 Psyr_4631 PrkA serine kinase 0.42 Psyr_1325 Protein of unknown function DUF548 — —
Pseudomonas segetis P6 0.79 MPMX49_00875 hypothetical protein 0.41 MPMX49_01631 Ribosomal RNA small subunit methyltransferase J low > 75
Pseudomonas sp. SVBP6 0.79 COO64_RS22530 PrkA family serine protein kinase 0.40 COO64_RS19535 class I SAM-dependent methyltransferase low > 93
Pseudomonas stutzeri RCH2 0.79 Psest_3672 Putative Ser protein kinase 0.41 Psest_1563 Protein of unknown function (DUF548). low > 67
Pseudomonas sp. S08-1 0.79 OH686_15020 Uncharacterized protein YeaG 0.41 OH686_06755 16S rRNA (guanine(1516)-N(2))-methyltransferase low > 80
Pseudomonas fluorescens FW300-N2E2 0.78 Pf6N2E2_4801 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) 0.38 Pf6N2E2_3094 SAM-dependent methyltransferase (EC 2.1.1.-) low > 103
Pseudomonas fluorescens GW456-L13 0.78 PfGW456L13_1196 Serine protein kinase (prkA protein), P-loop containing 0.39 PfGW456L13_4733 SAM-dependent methyltransferase (EC 2.1.1.-) low > 87
Pseudomonas sp. RS175 0.78 PFR28_04068 hypothetical protein 0.37 PFR28_00376 Ribosomal RNA small subunit methyltransferase J low > 88
Pseudomonas sp. DMC3 0.78 GFF41 hypothetical protein 0.38 GFF2031 Ribosomal RNA small subunit methyltransferase J low > 89
Pseudomonas fluorescens FW300-N2E3 0.78 AO353_07335 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) 0.40 AO353_16350 SAM-dependent methyltransferase low > 101
Pseudomonas fluorescens FW300-N1B4 0.78 Pf1N1B4_2523 Serine protein kinase (prkA protein), P-loop containing 0.40 Pf1N1B4_3060 SAM-dependent methyltransferase (EC 2.1.1.-) — —
Pseudomonas simiae WCS417 0.78 PS417_25830 serine/threonine protein kinase 0.38 PS417_06100 SAM-dependent methyltransferase low > 88
Pseudomonas orientalis W4I3 0.78 QF045_RS00230 PrkA family serine protein kinase 0.39 QF045_RS08950 class I SAM-dependent methyltransferase low > 93
Pseudomonas fluorescens FW300-N2C3 0.78 AO356_14315 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) 0.39 AO356_06145 SAM-dependent methyltransferase low > 104
Pseudomonas lactucae CFBP13502 0.77 GEMAOFIL_05286 hypothetical protein 0.38 GEMAOFIL_01390 Ribosomal RNA small subunit methyltransferase J low > 96
Pseudomonas aeruginosa MRSN321 0.77 DY961_RS22965 PrkA family serine protein kinase 0.40 DY961_RS14575 class I SAM-dependent methyltransferase low > 100
Pseudomonas aeruginosa PUPa3 0.77 DQ20_RS36380 PrkA family serine protein kinase 0.40 DQ20_RS42550 class I SAM-dependent methyltransferase low > 101
Pseudomonas aeruginosa PA14 0.77 IKLFDK_22470 PrkA family serine protein kinase 0.40 IKLFDK_18790 Ribosomal RNA small subunit methyltransferase J low > 98
Pseudomonas fluorescens SBW25 0.77 PFLU_RS27485 PrkA family serine protein kinase 0.38 PFLU_RS06170 ribosomal RNA small subunit methyltransferase J low > 109
Pseudomonas fluorescens SBW25-INTG 0.77 PFLU_RS27485 PrkA family serine protein kinase 0.38 PFLU_RS06170 ribosomal RNA small subunit methyltransferase J low > 109

Not shown: 19 genomes with orthologs for CSW01_09380 only; 1 genomes with orthologs for CSW01_00395 only