Conservation of cofitness between CSW01_04590 and CSW01_00395 in Vibrio cholerae E7946 ATCC 55056

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04590 transcriptional regulator GcvA 1.0 CSW01_00395 ribosomal RNA small subunit methyltransferase J 0.70 1
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.73 GFF4865 Glycine cleavage system transcriptional activator GcvA 0.55 GFF518 rRNA small subunit methyltransferase J low > 78
Serratia liquefaciens MT49 0.72 IAI46_20340 transcriptional regulator GcvA 0.56 IAI46_24205 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 87
Rahnella sp. WP5 0.72 EX31_RS13110 transcriptional regulator GcvA 0.56 EX31_RS05160 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 89
Erwinia amylovora T8 0.72 OLJFJH_09170 Glycine cleavage system transcriptional activator 0.54 OLJFJH_04525 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 58
Shewanella amazonensis SB2B 0.72 Sama_2429 DNA-binding transcriptional activator GcvA (RefSeq) 0.61 Sama_3564 hypothetical protein (RefSeq) low > 62
Escherichia coli ECRC100 0.72 OKFHMN_20120 gcvA glycine cleavage system transcriptional regulator GcvA 0.55 OKFHMN_16420 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 79
Escherichia coli ECOR38 0.72 HEPCGN_19375 gcvA glycine cleavage system transcriptional regulator GcvA 0.55 HEPCGN_15330 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 88
Escherichia coli ECOR27 0.72 NOLOHH_12000 gcvA glycine cleavage system transcriptional regulator GcvA 0.55 NOLOHH_08355 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 76
Escherichia coli ECRC101 0.72 MCAODC_10645 gcvA glycine cleavage system transcriptional regulator GcvA 0.55 MCAODC_06935 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 87
Escherichia coli ECRC62 0.72 BNILDI_10505 gcvA glycine cleavage system transcriptional regulator GcvA 0.55 BNILDI_03205 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 75
Escherichia coli BL21 0.72 ECD_02659 glycine cleavage system transcriptional activator; autorepressor 0.55 ECD_03346 16S rRNA m(2)G1516 methyltransferase, SAM-dependent low > 61
Escherichia coli ECRC102 0.72 NIAGMN_17890 gcvA glycine cleavage system transcriptional regulator GcvA 0.55 NIAGMN_14185 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 80
Escherichia fergusonii Becca 0.72 EFB2_01109 Glycine cleavage system transcriptional activator 0.55 EFB2_00318 Ribosomal RNA small subunit methyltransferase J low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_00923 Glycine cleavage system transcriptional activator 0.55 OHPLBJKB_00206 Ribosomal RNA small subunit methyltransferase J low > 74
Escherichia coli Nissle 1917 0.72 ECOLIN_RS15650 glycine cleavage system transcriptional regulator GcvA 0.55 ECOLIN_RS19980 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 55
Escherichia coli BW25113 0.72 b2808 gcvA DNA-binding transcriptional dual regulator (NCBI) 0.55 b3497 yhiQ predicted SAM-dependent methyltransferase (NCBI) 0.32 52
Escherichia coli ECRC98 0.72 JDDGAC_23785 gcvA glycine cleavage system transcriptional regulator GcvA 0.55 JDDGAC_20050 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 87
Escherichia coli ECRC99 0.72 KEDOAH_08010 gcvA glycine cleavage system transcriptional regulator GcvA 0.55 KEDOAH_11725 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ — —
Enterobacter sp. TBS_079 0.71 MPMX20_03671 Glycine cleavage system transcriptional activator 0.53 MPMX20_04396 Ribosomal RNA small subunit methyltransferase J low > 85
Erwinia tracheiphila SCR3 0.71 LU632_RS06255 transcriptional regulator GcvA 0.53 LU632_RS19465 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 73
Erwinia tracheiphila HP pepo 2.2 0.71 IJEDHG_17275 gcvA Glycine cleavage system transcriptional activator 0.53 IJEDHG_12595 rsmJ 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 61
Pantoea sp. MT58 0.71 IAI47_04025 transcriptional regulator GcvA 0.52 IAI47_01350 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 76
Klebsiella michiganensis M5al 0.71 BWI76_RS22955 transcriptional regulator GcvA 0.50 BWI76_RS26605 16S rRNA (guanine(1516)-N(2))-methyltransferase low > 92
Dickeya dadantii 3937 0.71 DDA3937_RS05050 transcriptional regulator GcvA 0.54 DDA3937_RS21270 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 74
Pantoea agglomerans CFBP13505 P0401 0.71 PagCFBP13505_RS16945 transcriptional regulator GcvA 0.52 PagCFBP13505_RS17850 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 74
Enterobacter asburiae PDN3 0.71 EX28DRAFT_2883 Transcriptional regulator 0.55 EX28DRAFT_4064 Putative SAM-dependent methyltransferase low > 76
Dickeya dianthicola ME23 0.71 DZA65_RS05390 transcriptional regulator GcvA 0.50 DZA65_RS00030 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 75
Shewanella sp. ANA-3 0.71 Shewana3_2894 DNA-binding transcriptional activator GcvA (RefSeq) 0.60 Shewana3_4037 hypothetical protein (RefSeq) — —
Dickeya dianthicola 67-19 0.71 HGI48_RS05050 transcriptional regulator GcvA 0.50 HGI48_RS00040 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 71
Pectobacterium carotovorum WPP14 0.71 HER17_RS16415 transcriptional regulator GcvA 0.54 HER17_RS21305 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 75
Shewanella loihica PV-4 0.71 Shew_2764 DNA-binding transcriptional activator GcvA (RefSeq) 0.58 Shew_3647 hypothetical protein (RefSeq) — —
Alteromonas macleodii MIT1002 0.65 MIT1002_01520 Gcv operon activator 0.38 MIT1002_00112 Ribosomal RNA small subunit methyltransferase J low > 70
Klebsiella pneumoniae MKP103 0.63 KDGMDA_03515 Glycine cleavage system transcriptional activator 0.55 KDGMDA_07420 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ low > 95
Kangiella aquimarina DSM 16071 0.53 B158DRAFT_0909 Transcriptional regulator 0.36 B158DRAFT_0446 Adenine-specific DNA methylase low > 40
Pseudomonas fluorescens FW300-N2E2 0.37 Pf6N2E2_1560 Glycine cleavage system transcriptional activator GcvA 0.38 Pf6N2E2_3094 SAM-dependent methyltransferase (EC 2.1.1.-) low > 103
Pseudomonas sp. SVBP6 0.34 COO64_RS14470 gcvA transcriptional regulator GcvA 0.40 COO64_RS19535 class I SAM-dependent methyltransferase low > 93
Pseudomonas aeruginosa MRSN321 0.31 DY961_RS22230 LysR family transcriptional regulator 0.40 DY961_RS14575 class I SAM-dependent methyltransferase low > 100
Pseudomonas aeruginosa PUPa3 0.31 DQ20_RS37090 LysR family transcriptional regulator 0.40 DQ20_RS42550 class I SAM-dependent methyltransferase low > 101
Pseudomonas fluorescens FW300-N2C3 0.31 AO356_15125 LysR family transcriptional regulator 0.39 AO356_06145 SAM-dependent methyltransferase low > 104
Pseudomonas aeruginosa PA14 0.31 IKLFDK_23190 LysR family transcriptional regulator 0.40 IKLFDK_18790 Ribosomal RNA small subunit methyltransferase J low > 98
Pseudomonas sp. RS175 0.31 PFR28_04727 Glycine cleavage system transcriptional activator 0.37 PFR28_00376 Ribosomal RNA small subunit methyltransferase J low > 88
Pseudomonas sp. S08-1 0.31 OH686_11695 Transcriptional regulator, LysR family 0.41 OH686_06755 16S rRNA (guanine(1516)-N(2))-methyltransferase 0.75 53
Pseudomonas lactucae CFBP13502 0.30 GEMAOFIL_02417 Glycine cleavage system transcriptional activator 0.38 GEMAOFIL_01390 Ribosomal RNA small subunit methyltransferase J 0.67 43
Pseudomonas sp. BP01 0.30 JOY50_RS09180 LysR family transcriptional regulator 0.39 JOY50_RS26070 class I SAM-dependent methyltransferase low > 84
Pseudomonas putida KT2440 0.30 PP_0661 putative Transcriptional regulator AmpR 0.39 PP_1513 Ribosomal RNA small subunit methyltransferase J low > 96
Pseudomonas stutzeri RCH2 0.30 Psest_2739 Transcriptional regulator 0.41 Psest_1563 Protein of unknown function (DUF548). low > 67
Pseudomonas simiae WCS417 0.30 PS417_23350 LysR family transcriptional regulator 0.38 PS417_06100 SAM-dependent methyltransferase low > 88
Pseudomonas fluorescens FW300-N1B4 0.30 Pf1N1B4_1817 Glycine cleavage system transcriptional activator 0.40 Pf1N1B4_3060 SAM-dependent methyltransferase (EC 2.1.1.-) — —
Pseudomonas fluorescens SBW25-INTG 0.30 PFLU_RS25165 LysR family transcriptional regulator 0.38 PFLU_RS06170 ribosomal RNA small subunit methyltransferase J low > 109
Pseudomonas fluorescens SBW25 0.30 PFLU_RS25165 LysR family transcriptional regulator 0.38 PFLU_RS06170 ribosomal RNA small subunit methyltransferase J low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_5015 transcriptional regulator, LysR family 0.42 Psyr_1325 Protein of unknown function DUF548 low > 86
Pseudomonas segetis P6 0.29 ACVTMO_RS01970 LysR family transcriptional regulator 0.41 ACVTMO_RS08075 class I SAM-dependent methyltransferase low > 75
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_5015 transcriptional regulator, LysR family 0.42 Psyr_1325 Protein of unknown function DUF548 — —
Pseudomonas fluorescens GW456-L13 0.29 PfGW456L13_555 Glycine cleavage system transcriptional activator 0.39 PfGW456L13_4733 SAM-dependent methyltransferase (EC 2.1.1.-) low > 87
Pseudomonas orientalis W4I3 0.29 QF045_RS03520 LysR family transcriptional regulator 0.39 QF045_RS08950 class I SAM-dependent methyltransferase low > 93
Pseudomonas sp. DMC3 0.29 GFF687 Glycine cleavage system transcriptional activator 0.38 GFF2031 Ribosomal RNA small subunit methyltransferase J low > 89
Pseudomonas fluorescens FW300-N2E3 0.29 AO353_15505 LysR family transcriptional regulator 0.40 AO353_16350 SAM-dependent methyltransferase low > 101

Not shown: 46 genomes with orthologs for CSW01_04590 only; 0 genomes with orthologs for CSW01_00395 only