Conservation of cofitness between A4249_RS08425 and A4249_RS07650 in Brevundimonas sp. GW460-12-10-14-LB2

28 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Brevundimonas sp. GW460-12-10-14-LB2 1.0 A4249_RS08425 class I SAM-dependent RNA methyltransferase 1.0 A4249_RS07650 LacI family DNA-binding transcriptional regulator 0.51 17
Caulobacter crescentus NA1000 0.57 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.59 CCNA_01556 LacI-family transcriptional regulator low > 66
Caulobacter crescentus NA1000 Δfur 0.57 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.59 CCNA_01556 LacI-family transcriptional regulator low > 67
Bosea sp. OAE506 0.38 ABIE41_RS22255 RNA methyltransferase 0.21 ABIE41_RS20550 LacI family DNA-binding transcriptional regulator low > 77
Agrobacterium fabrum C58 0.36 Atu0735 RNA methyltransferase 0.19 Atu5393 LacI family transcription regulator — —
Rhizobium sp. OAE497 0.36 ABIE40_RS03880 class I SAM-dependent RNA methyltransferase 0.20 ABIE40_RS26265 LacI family DNA-binding transcriptional regulator low > 107
Dinoroseobacter shibae DFL-12 0.35 Dshi_3492 (Uracil-5)-methyltransferase (RefSeq) 0.17 Dshi_2029 transcriptional regulator, LacI family (RefSeq) low > 64
Sphingomonas koreensis DSMZ 15582 0.30 Ga0059261_0648 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 0.46 Ga0059261_2972 transcriptional regulator, LacI family 0.34 28
Azospirillum brasilense Sp245 0.26 AZOBR_RS01195 RNA methyltransferase 0.15 AZOBR_RS26385 transcriptional regulator — —
Azospirillum sp. SherDot2 0.26 MPMX19_02196 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.19 MPMX19_04765 HTH-type transcriptional repressor CytR low > 112
Shewanella oneidensis MR-1 0.16 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.38 SO3516 transcriptional regulator, LacI family (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.16 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.38 Shewana3_3122 LacI family transcription regulator (RefSeq) low > 73
Shewanella amazonensis SB2B 0.16 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.38 Sama_0937 LacI family transcription regulator (RefSeq) low > 62
Rhodanobacter denitrificans MT42 0.15 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.38 LRK55_RS07445 LacI family DNA-binding transcriptional regulator low > 63
Dyella japonica UNC79MFTsu3.2 0.15 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.38 ABZR86_RS16055 LacI family DNA-binding transcriptional regulator low > 74
Shewanella loihica PV-4 0.14 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.34 Shew_1111 LacI family transcription regulator (RefSeq) low > 60
Rhodanobacter sp. FW510-T8 0.14 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.37 OKGIIK_14245 purR LacI family transcriptional regulator low > 52
Rhodanobacter denitrificans FW104-10B01 0.14 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.38 LRK54_RS07715 LacI family DNA-binding transcriptional regulator low > 59
Xanthomonas campestris pv. campestris strain 8004 0.14 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.51 Xcc-8004.205.1 Ribose operon repressor low > 74
Castellaniella sp019104865 MT123 0.14 ABCV34_RS03050 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.18 ABCV34_RS07410 LacI family DNA-binding transcriptional regulator low > 48
Ralstonia solanacearum UW163 0.14 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 UW163_RS16735 LacI family transcriptional regulator — —
Ralstonia solanacearum IBSBF1503 0.14 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 RALBFv3_RS23485 LacI family transcriptional regulator low > 76
Ralstonia sp. UNC404CL21Col 0.14 ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 ABZR87_RS23235 LacI family DNA-binding transcriptional regulator low > 80
Alteromonas macleodii MIT1002 0.13 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.38 MIT1002_02429 Glucose-resistance amylase regulator low > 70
Ralstonia solanacearum GMI1000 0.13 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 RS_RS24965 LacI family DNA-binding transcriptional regulator low > 80
Ralstonia solanacearum PSI07 0.13 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 RPSI07_RS07655 LacI family DNA-binding transcriptional regulator low > 81
Acidovorax sp. GW101-3H11 0.13 Ac3H11_2847 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.23 Ac3H11_1840 Ribose operon repressor low > 79
Lysobacter sp. OAE881 0.12 ABIE51_RS13830 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.52 ABIE51_RS02835 LacI family DNA-binding transcriptional regulator low > 62
Burkholderia phytofirmans PsJN 0.12 BPHYT_RS09125 23S rRNA methyltransferase 0.23 BPHYT_RS11205 LacI family transcription regulator low > 109

Not shown: 59 genomes with orthologs for A4249_RS08425 only; 2 genomes with orthologs for A4249_RS07650 only