| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Dinoroseobacter shibae DFL-12 | 1.0 | Dshi_0451 | | coenzyme PQQ biosynthesis protein B (RefSeq) | 1.0 | Dshi_2699 | | ABC transporter related (RefSeq) | 0.42 | 1 |
| Sinorhizobium meliloti 1021 | 0.55 | SM_b20205 | | pyrroloquinoline quinone biosynthesis protein PqqB | 0.58 | SM_b21707 | | branched-chain amino acid ABC transporter ATP-binding protein | low | > 103 |
| Xanthobacter sp. DMC5 | 0.52 | GFF3711 | | Coenzyme PQQ synthesis protein B | 0.70 | GFF903 | | High-affinity branched-chain amino acid transport ATP-binding protein LivF | — | — |
| Azospirillum sp. SherDot2 | 0.50 | MPMX19_05113 | | Coenzyme PQQ synthesis protein B | 0.72 | MPMX19_03832 | | High-affinity branched-chain amino acid transport ATP-binding protein LivF | low | > 112 |
| Rhodopseudomonas palustris CGA009 | 0.46 | TX73_010040 | | pyrroloquinoline quinone biosynthesis protein PqqB | 0.72 | TX73_018995 | | urea ABC transporter ATP-binding subunit UrtE | low | > 86 |
| Pseudomonas aeruginosa PA14 | 0.34 | IKLFDK_09705 | | pyrroloquinoline quinone biosynthesis protein PqqB | 0.57 | IKLFDK_29250 | | urea ABC transporter ATP-binding subunit UrtE | low | > 101 |
| Pseudomonas fluorescens FW300-N2C3 | 0.33 | AO356_30410 | | pyrroloquinoline quinone biosynthesis protein PqqB | 0.56 | AO356_08360 | | ABC transporter ATP-binding protein | low | > 104 |
| Marinobacter adhaerens HP15 | 0.33 | HP15_3140 | | pyrroloquinoline quinone biosynthesis protein PqqB | 0.48 | HP15_2877 | | ABC transporter, urea, ATP-binding protein, UrtE | low | > 73 |
| Pseudomonas putida KT2440 | 0.33 | PP_0379 | | Coenzyme PQQ synthesis protein B | 0.58 | PP_4845 | | putative Urea ABC transporter, ATP-binding protein | low | > 96 |
| Pseudomonas sp. BP01 | 0.33 | JOY50_RS18010 | pqqB | pyrroloquinoline quinone biosynthesis protein PqqB | 0.58 | JOY50_RS17495 | urtE | urea ABC transporter ATP-binding subunit UrtE | low | > 84 |
| Pseudomonas fluorescens GW456-L13 | 0.33 | PfGW456L13_1168 | | Coenzyme PQQ synthesis protein B | 0.55 | PfGW456L13_85 | | Urea ABC transporter, ATPase protein UrtE | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.33 | Pf6N2E2_1944 | | Coenzyme PQQ synthesis protein B | 0.56 | Pf6N2E2_3551 | | Urea ABC transporter, ATPase protein UrtE | — | — |
| Pseudomonas sp. SVBP6 | 0.32 | COO64_RS22645 | pqqB | pyrroloquinoline quinone biosynthesis protein PqqB | 0.58 | COO64_RS18155 | urtE | urea ABC transporter ATP-binding subunit UrtE | low | > 93 |
| Rahnella sp. WP5 | 0.32 | EX31_RS00670 | | pyrroloquinoline quinone biosynthesis protein PqqB | 0.55 | EX31_RS05640 | | urea ABC transporter ATP-binding subunit UrtE | low | > 89 |
| Pseudomonas sp. RS175 | 0.32 | PFR28_04087 | | Coenzyme PQQ synthesis protein B | 0.56 | PFR28_05183 | | High-affinity branched-chain amino acid transport ATP-binding protein LivF | low | > 88 |
| Pseudomonas stutzeri RCH2 | 0.32 | Psest_2273 | | coenzyme PQQ biosynthesis protein B | 0.55 | Psest_0563 | | urea ABC transporter, ATP-binding protein UrtE | low | > 67 |
| Pseudomonas simiae WCS417 | 0.32 | PS417_25925 | | pyrroloquinoline quinone biosynthesis protein PqqB | 0.56 | PS417_02815 | | urea ABC transporter ATP-binding protein | — | — |
| Pseudomonas fluorescens SBW25 | 0.32 | PFLU_RS27570 | | pyrroloquinoline quinone biosynthesis protein PqqB | 0.56 | PFLU_RS02885 | | urea ABC transporter ATP-binding subunit UrtE | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.32 | PFLU_RS27570 | | pyrroloquinoline quinone biosynthesis protein PqqB | 0.56 | PFLU_RS02885 | | urea ABC transporter ATP-binding subunit UrtE | low | > 109 |
| Pseudomonas sp. DMC3 | 0.32 | GFF59 | | Coenzyme PQQ synthesis protein B | 0.56 | GFF3283 | | High-affinity branched-chain amino acid transport ATP-binding protein LivF | low | > 89 |
| Pseudomonas fluorescens FW300-N1B4 | 0.31 | Pf1N1B4_4503 | | Coenzyme PQQ synthesis protein B | 0.56 | Pf1N1B4_1347 | | Urea ABC transporter, ATPase protein UrtE | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.31 | Psyr_4671 | | coenzyme PQQ synthesis protein B | 0.56 | Psyr_4430 | | amino acid/amide ABC transporter ATP-binding protein 2, HAAT family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.31 | Psyr_4671 | | coenzyme PQQ synthesis protein B | 0.56 | Psyr_4430 | | amino acid/amide ABC transporter ATP-binding protein 2, HAAT family | low | > 86 |
| Cupriavidus basilensis FW507-4G11 | 0.31 | RR42_RS11460 | | pyrroloquinoline quinone biosynthesis protein PqqB | 0.53 | RR42_RS05650 | | urea ABC transporter ATP-binding protein | low | > 128 |
| Pseudomonas fluorescens FW300-N2E3 | 0.31 | AO353_07435 | | pyrroloquinoline quinone biosynthesis protein PqqB | 0.57 | AO353_13525 | | ABC transporter ATP-binding protein | low | > 101 |
| Paraburkholderia sabiae LMG 24235 | 0.31 | QEN71_RS32690 | | pyrroloquinoline quinone biosynthesis protein PqqB | 0.55 | QEN71_RS25355 | | urea ABC transporter ATP-binding subunit UrtE | low | > 153 |
| Erwinia amylovora T8 | 0.31 | OLJFJH_02135 | | pyrroloquinoline quinone biosynthesis protein PqqB | 0.38 | OLJFJH_16740 | | ABC transporter ATP-binding protein | low | > 58 |
| Ralstonia sp. UNC404CL21Col | 0.31 | ABZR87_RS15945 | | pyrroloquinoline quinone biosynthesis protein PqqB | 0.56 | ABZR87_RS14755 | | urea ABC transporter ATP-binding subunit UrtE | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.30 | H281DRAFT_01330 | | pyrroloquinoline quinone biosynthesis protein B | 0.54 | H281DRAFT_00090 | | amino acid/amide ABC transporter ATP-binding protein 2, HAAT family | low | > 103 |
| Variovorax sp. OAS795 | 0.30 | ABID97_RS12720 | | pyrroloquinoline quinone biosynthesis protein PqqB | 0.55 | ABID97_RS22545 | | urea ABC transporter ATP-binding subunit UrtE | low | > 91 |
| Paraburkholderia graminis OAS925 | 0.30 | ABIE53_005483 | | pyrroloquinoline quinone biosynthesis protein B | 0.54 | ABIE53_001201 | | urea transport system ATP-binding protein | low | > 113 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.29 | GFF5404 | | Coenzyme PQQ synthesis protein B | 0.56 | GFF3279 | | Urea ABC transporter, ATPase protein UrtE | — | — |
| Methylophilus sp. DMC18 | 0.29 | GFF668 | | Coenzyme PQQ synthesis protein B | 0.47 | GFF1936 | | High-affinity branched-chain amino acid transport ATP-binding protein LivF | low | > 43 |
| Pantoea sp. MT58 | 0.28 | IAI47_10220 | | pyrroloquinoline quinone biosynthesis protein PqqB | 0.57 | IAI47_16300 | | urea ABC transporter ATP-binding subunit UrtE | low | > 76 |
Not shown: 2 genomes with orthologs for Dshi_0451 only; 19 genomes with orthologs for Dshi_2699 only