| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Bacteroides thetaiotaomicron VPI-5482 | 1.0 | BT2407 | | NAD-utilizing dehydrogenases (NCBI ptt file) | 1.0 | BT0156 | | transcriptional regulator (NCBI ptt file) | 0.28 | 6 |
| Bacteroides ovatus ATCC 8483 | 0.93 | BACOVA_03018 | | hypothetical protein | 0.92 | BACOVA_01281 | | transcriptional regulator, LuxR family | low | > 94 |
| Bacteroides stercoris CC31F | 0.80 | HMPREF1181_RS00080 | | FAD-binding protein | 0.85 | HMPREF1181_RS05280 | | response regulator transcription factor | low | > 56 |
| Phocaeicola dorei CL03T12C01 | 0.80 | ABI39_RS10410 | | FAD-binding protein | 0.45 | ABI39_RS02195 | | response regulator transcription factor | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.80 | HMPREF1058_RS14705 | | FAD-binding protein | 0.44 | HMPREF1058_RS02885 | | response regulator transcription factor | low | > 67 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.47 | Echvi_2992 | | Uncharacterized FAD-dependent dehydrogenases | 0.19 | Echvi_1897 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | low | > 79 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.47 | CA264_05655 | | FAD-binding protein | 0.21 | CA264_01935 | | DNA-binding response regulator | 0.33 | 31 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.45 | CA265_RS00035 | | FAD-binding protein | 0.15 | CA265_RS06355 | | DNA-binding response regulator | low | > 88 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.45 | ABZR88_RS00180 | | NAD(P)/FAD-dependent oxidoreductase | 0.12 | ABZR88_RS08650 | | response regulator transcription factor | low | > 71 |
| Variovorax sp. OAS795 | 0.31 | ABID97_RS06075 | | NAD(P)/FAD-dependent oxidoreductase | 0.16 | ABID97_RS12700 | | response regulator transcription factor | low | > 91 |
| Acidovorax sp. GW101-3H11 | 0.30 | Ac3H11_1973 | | NAD(FAD)-utilizing dehydrogenase, sll0175 homolog | 0.15 | Ac3H11_3852 | | DNA-binding response regulator, LuxR family | — | — |
| Pseudomonas sp. S08-1 | 0.30 | OH686_23805 | | NAD(FAD)-utilizing dehydrogenase, sll0175-related | 0.18 | OH686_21830 | | Two-component transcriptional response regulator, NarL/FixJ family | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.30 | Psest_1345 | | Uncharacterized FAD-dependent dehydrogenases | 0.18 | Psest_0662 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | low | > 67 |
| Pseudomonas simiae WCS417 | 0.30 | PS417_06555 | | hypothetical protein | 0.17 | PS417_19630 | | LuxR family transcriptional regulator | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.30 | PFLU_RS06585 | | NAD(P)/FAD-dependent oxidoreductase | 0.17 | PFLU_RS21600 | | response regulator transcription factor | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.30 | PFLU_RS06585 | | NAD(P)/FAD-dependent oxidoreductase | 0.17 | PFLU_RS21600 | | response regulator transcription factor | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.30 | Pf6N2E2_2935 | | NAD(FAD)-utilizing dehydrogenase, sll0175 homolog | 0.18 | Pf6N2E2_2418 | | DNA-binding response regulator, LuxR family | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.30 | AO356_05380 | | hypothetical protein | 0.18 | AO356_02965 | | LuxR family transcriptional regulator | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.30 | Pf1N1B4_3204 | | NAD(FAD)-utilizing dehydrogenase, sll0175 homolog | 0.17 | Pf1N1B4_5052 | | Two-component response regulator | — | — |
| Pseudomonas sp. RS175 | 0.30 | PFR28_00528 | | hypothetical protein | 0.18 | PFR28_01009 | | Transcriptional regulatory protein DegU | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.29 | PfGW456L13_4615 | | NAD(FAD)-utilizing dehydrogenase, sll0175 homolog | 0.17 | PfGW456L13_2277 | | DNA-binding response regulator, LuxR family | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.29 | AO353_17065 | | hypothetical protein | 0.18 | AO353_19270 | | LuxR family transcriptional regulator | low | > 101 |
| Pseudomonas putida KT2440 | 0.29 | PP_1134 | | conserved protein of unknown function | 0.19 | PP_2126 | | DNA-binding response regulator, LuxR family | low | > 96 |
| Pseudomonas syringae pv. syringae B728a | 0.29 | Psyr_3851 | | conserved hypothetical protein | 0.16 | Psyr_1940 | | regulatory protein, LuxR:Response regulator receiver | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.29 | Psyr_3851 | | conserved hypothetical protein | 0.16 | Psyr_1940 | | regulatory protein, LuxR:Response regulator receiver | — | — |
| Rhodanobacter denitrificans MT42 | 0.28 | LRK55_RS10725 | | NAD(P)/FAD-dependent oxidoreductase | 0.16 | LRK55_RS14195 | | response regulator transcription factor | — | — |
| Paraburkholderia graminis OAS925 | 0.28 | ABIE53_000002 | | putative FAD-dependent dehydrogenase | 0.17 | ABIE53_004191 | | DNA-binding NarL/FixJ family response regulator | low | > 113 |
| Rhodanobacter denitrificans FW104-10B01 | 0.28 | LRK54_RS11020 | | NAD(P)/FAD-dependent oxidoreductase | 0.16 | LRK54_RS14480 | | response regulator transcription factor | low | > 59 |
| Cupriavidus basilensis FW507-4G11 | 0.28 | RR42_RS05000 | | hypothetical protein | 0.21 | RR42_RS00785 | | LuxR family transcriptional regulator | low | > 128 |
| Herbaspirillum seropedicae SmR1 | 0.28 | HSERO_RS23815 | | hypothetical protein | 0.19 | HSERO_RS12850 | | LuxR family transcriptional regulator | low | > 78 |
| Burkholderia phytofirmans PsJN | 0.28 | BPHYT_RS18245 | | hypothetical protein | 0.19 | BPHYT_RS30900 | | transcriptional regulator | low | > 109 |
| Dechlorosoma suillum PS | 0.28 | Dsui_0040 | | FAD-dependent dehydrogenase | 0.16 | Dsui_1862 | | response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | low | > 51 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.28 | GFF530 | | NAD(FAD)-utilizing dehydrogenase, sll0175 homolog | 0.19 | GFF2789 | | DNA-binding response regulator, LuxR family | low | > 90 |
| Rhodanobacter sp. FW510-T8 | 0.28 | OKGIIK_12855 | | Pyr-redox-2 domain-containing protein | 0.15 | OKGIIK_03330 | citB | DNA-binding response regulator | low | > 52 |
| Vibrio cholerae E7946 ATCC 55056 | 0.27 | CSW01_04160 | | NAD(P)/FAD-dependent oxidoreductase | 0.17 | CSW01_06455 | | DNA-binding response regulator | low | > 62 |
Not shown: 12 genomes with orthologs for BT2407 only; 48 genomes with orthologs for BT0156 only