Conservation of cofitness between b4238 and b3159 in Escherichia coli BW25113

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b4238 nrdD anaerobic ribonucleoside triphosphate reductase (NCBI) 1.0 b3159 yhbV orf, hypothetical protein (VIMSS) 0.49 15
Escherichia coli ECRC62 1.00 BNILDI_07340 nrdD anaerobic ribonucleoside-triphosphate reductase 1.00 BNILDI_01560 rlhA U32 family peptidase — —
Escherichia coli BL21 1.00 ECD_04106 anaerobic ribonucleoside-triphosphate reductase 1.00 ECD_03026 U32 peptidase family protein low > 60
Escherichia coli ECOR27 1.00 NOLOHH_04170 nrdD anaerobic ribonucleoside-triphosphate reductase 0.99 NOLOHH_09970 rlhA U32 family peptidase low > 57
Escherichia coli ECOR38 1.00 HEPCGN_10100 nrdD anaerobic ribonucleoside-triphosphate reductase 0.99 HEPCGN_17045 rlhA U32 family peptidase low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03797 Anaerobic ribonucleoside-triphosphate reductase 0.99 OHPLBJKB_00541 hypothetical protein low > 73
Escherichia coli ECRC101 1.00 MCAODC_02410 nrdD anaerobic ribonucleoside-triphosphate reductase 1.00 MCAODC_08690 rlhA U32 family peptidase — —
Escherichia coli ECRC102 1.00 NIAGMN_09755 nrdD anaerobic ribonucleoside-triphosphate reductase 1.00 NIAGMN_15930 rlhA U32 family peptidase — —
Escherichia coli ECRC101 1.00 OKFHMN_11905 nrdD anaerobic ribonucleoside-triphosphate reductase 1.00 OKFHMN_18170 rlhA U32 family peptidase — —
Escherichia coli ECRC98 1.00 JDDGAC_15545 nrdD anaerobic ribonucleoside-triphosphate reductase 1.00 JDDGAC_21795 rlhA U32 family peptidase — —
Escherichia coli ECRC99 1.00 KEDOAH_16250 nrdD anaerobic ribonucleoside-triphosphate reductase 1.00 KEDOAH_09980 rlhA U32 family peptidase — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS24585 anaerobic ribonucleoside-triphosphate reductase 1.00 ECOLIN_RS18145 U32 family peptidase low > 52
Escherichia fergusonii Becca 1.00 EFB2_04295 Anaerobic ribonucleoside-triphosphate reductase 0.99 EFB2_00664 hypothetical protein low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.97 GFF919 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) 0.94 GFF1509 FIG139928: Putative protease low > 78
Klebsiella michiganensis M5al 0.95 BWI76_RS02935 anaerobic ribonucleoside triphosphate reductase 0.92 BWI76_RS24975 U32 family peptidase low > 92
Enterobacter sp. TBS_079 0.95 MPMX20_00531 Anaerobic ribonucleoside-triphosphate reductase 0.92 MPMX20_04063 hypothetical protein low > 85
Enterobacter asburiae PDN3 0.94 EX28DRAFT_3437 ribonucleoside-triphosphate reductase class III catalytic subunit (EC 1.17.4.2) 0.95 EX28DRAFT_3208 Collagenase and related proteases low > 76
Dickeya dianthicola ME23 0.88 DZA65_RS01880 anaerobic ribonucleoside-triphosphate reductase 0.78 DZA65_RS03280 U32 family peptidase low > 75
Dickeya dianthicola 67-19 0.88 HGI48_RS01825 anaerobic ribonucleoside-triphosphate reductase 0.80 HGI48_RS03285 U32 family peptidase low > 71
Dickeya dadantii 3937 0.88 DDA3937_RS01875 anaerobic ribonucleoside-triphosphate reductase 0.80 DDA3937_RS03110 U32 family peptidase low > 74
Pectobacterium carotovorum WPP14 0.87 HER17_RS19525 anaerobic ribonucleoside-triphosphate reductase 0.80 HER17_RS18165 U32 family peptidase low > 75
Serratia liquefaciens MT49 0.87 IAI46_02135 anaerobic ribonucleoside-triphosphate reductase 0.80 IAI46_02010 U32 family peptidase 0.57 38
Rahnella sp. WP5 0.87 EX31_RS08395 anaerobic ribonucleoside-triphosphate reductase 0.80 EX31_RS08485 U32 family peptidase low > 89
Erwinia tracheiphila SCR3 0.81 LU632_RS20975 nrdD anaerobic ribonucleoside-triphosphate reductase 0.74 LU632_RS21010 U32 family peptidase 0.41 26
Shewanella oneidensis MR-1 0.80 SO2834 nrdD anaerobic ribonucleoside-triphosphate reductase (NCBI ptt file) 0.44 SO1248 hypothetical peptidase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.79 Shewana3_2603 anaerobic ribonucleoside triphosphate reductase (RefSeq) 0.44 Shewana3_1064 peptidase U32 (RefSeq) low > 73
Pantoea sp. MT58 0.79 IAI47_16925 anaerobic ribonucleoside-triphosphate reductase 0.74 IAI47_16970 U32 family peptidase low > 76
Shewanella loihica PV-4 0.78 Shew_2449 anaerobic ribonucleoside triphosphate reductase (RefSeq) 0.44 Shew_2788 peptidase U32 (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.78 CSW01_16800 anaerobic ribonucleoside-triphosphate reductase 0.68 CSW01_03430 U32 family peptidase low > 62
Shewanella amazonensis SB2B 0.77 Sama_1275 anaerobic ribonucleoside triphosphate reductase (RefSeq) 0.41 Sama_0997 peptidase U32 (RefSeq) low > 62
Pseudomonas simiae WCS417 0.09 PS417_15690 ribonucleoside-triphosphate reductase 0.48 PS417_15750 protease low > 88
Rhodospirillum rubrum S1H 0.09 Rru_A1276 ATP-cone (NCBI) 0.22 Rru_A2524 Peptidase U32 (NCBI) low > 58
Ralstonia solanacearum IBSBF1503 0.09 RALBFv3_RS16725 ribonucleoside triphosphate reductase 0.36 RALBFv3_RS16700 U32 family peptidase low > 76
Ralstonia solanacearum UW163 0.09 UW163_RS18080 ribonucleoside triphosphate reductase 0.36 UW163_RS18055 U32 family peptidase — —
Ralstonia solanacearum PSI07 0.09 RPSI07_RS06720 ribonucleoside triphosphate reductase 0.35 RPSI07_RS06745 U32 family peptidase low > 81
Pseudomonas sp. RS175 0.09 PFR28_01638 Anaerobic ribonucleoside-triphosphate reductase 0.47 PFR28_02213 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2C3 0.09 AO356_25235 anaerobic ribonucleoside-triphosphate reductase 0.47 AO356_25165 protease 0.65 16
Pseudomonas fluorescens FW300-N2E2 0.09 Pf6N2E2_735 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) 0.47 Pf6N2E2_722 FIG139928: Putative protease 0.88 6
Ralstonia solanacearum GMI1000 0.09 RS_RS21760 ribonucleoside triphosphate reductase 0.35 RS_RS21790 U32 family peptidase low > 80
Pseudomonas fluorescens FW300-N2E3 0.09 AO353_22125 anaerobic ribonucleoside-triphosphate reductase 0.46 AO353_22055 protease low > 101
Kangiella aquimarina DSM 16071 0.09 B158DRAFT_1727 ribonucleoside-triphosphate reductase class III catalytic subunit (EC 1.17.4.2) 0.38 B158DRAFT_2374 Collagenase and related proteases low > 40
Pseudomonas fluorescens FW300-N1B4 0.08 Pf1N1B4_5729 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) 0.47 Pf1N1B4_5745 FIG139928: Putative protease 0.62 25
Acidovorax sp. GW101-3H11 0.08 Ac3H11_3312 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) 0.38 Ac3H11_4295 FIG139928: Putative protease low > 79
Pseudomonas stutzeri RCH2 0.08 Psest_0840 anaerobic ribonucleoside-triphosphate reductase 0.46 Psest_0836 Collagenase and related proteases low > 67

Not shown: 12 genomes with orthologs for b4238 only; 7 genomes with orthologs for b3159 only