Conservation of cofitness between b4238 and b3158 in Escherichia coli BW25113

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b4238 nrdD anaerobic ribonucleoside triphosphate reductase (NCBI) 1.0 b3158 yhbU predicted peptidase (collagenase-like) (NCBI) 0.50 12
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03797 Anaerobic ribonucleoside-triphosphate reductase 1.00 OHPLBJKB_00542 putative protease YhbU low > 73
Escherichia coli ECOR27 1.00 NOLOHH_04170 nrdD anaerobic ribonucleoside-triphosphate reductase 1.00 NOLOHH_09975 ubiU Ubiquinone biosynthesis protein UbiU 0.61 39
Escherichia coli ECOR38 1.00 HEPCGN_10100 nrdD anaerobic ribonucleoside-triphosphate reductase 1.00 HEPCGN_17050 protease low > 85
Escherichia coli ECRC62 1.00 BNILDI_07340 nrdD anaerobic ribonucleoside-triphosphate reductase 1.00 BNILDI_01555 ubiU Ubiquinone biosynthesis protein UbiU — —
Escherichia coli BL21 1.00 ECD_04106 anaerobic ribonucleoside-triphosphate reductase 1.00 ECD_03025 U32 peptidase family protein low > 60
Escherichia coli ECRC101 1.00 OKFHMN_11905 nrdD anaerobic ribonucleoside-triphosphate reductase 1.00 OKFHMN_18175 protease — —
Escherichia coli ECRC101 1.00 MCAODC_02410 nrdD anaerobic ribonucleoside-triphosphate reductase 1.00 MCAODC_08695 protease — —
Escherichia coli ECRC98 1.00 JDDGAC_15545 nrdD anaerobic ribonucleoside-triphosphate reductase 1.00 JDDGAC_21800 protease — —
Escherichia coli ECRC102 1.00 NIAGMN_09755 nrdD anaerobic ribonucleoside-triphosphate reductase 1.00 NIAGMN_15935 ubiU Ubiquinone biosynthesis protein UbiU — —
Escherichia coli ECRC99 1.00 KEDOAH_16250 nrdD anaerobic ribonucleoside-triphosphate reductase 1.00 KEDOAH_09975 protease — —
Escherichia fergusonii Becca 1.00 EFB2_04295 Anaerobic ribonucleoside-triphosphate reductase 0.99 EFB2_00665 putative protease YhbU low > 86
Escherichia coli Nissle 1917 1.00 ECOLIN_RS24585 anaerobic ribonucleoside-triphosphate reductase 1.00 ECOLIN_RS18140 peptidase U32 family protein low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.97 GFF919 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) 0.97 GFF1510 FIG139552: Putative protease low > 78
Klebsiella michiganensis M5al 0.95 BWI76_RS02935 anaerobic ribonucleoside triphosphate reductase 0.98 BWI76_RS24970 peptidase U32 low > 92
Enterobacter sp. TBS_079 0.95 MPMX20_00531 Anaerobic ribonucleoside-triphosphate reductase 0.94 MPMX20_04062 putative protease YhbU low > 85
Enterobacter asburiae PDN3 0.94 EX28DRAFT_3437 ribonucleoside-triphosphate reductase class III catalytic subunit (EC 1.17.4.2) 0.94 EX28DRAFT_3207 Collagenase and related proteases low > 76
Dickeya dianthicola ME23 0.88 DZA65_RS01880 anaerobic ribonucleoside-triphosphate reductase 0.89 DZA65_RS03285 U32 family peptidase low > 75
Dickeya dianthicola 67-19 0.88 HGI48_RS01825 anaerobic ribonucleoside-triphosphate reductase 0.88 HGI48_RS03290 U32 family peptidase low > 71
Dickeya dadantii 3937 0.88 DDA3937_RS01875 anaerobic ribonucleoside-triphosphate reductase 0.88 DDA3937_RS03115 U32 family peptidase low > 74
Pectobacterium carotovorum WPP14 0.87 HER17_RS19525 anaerobic ribonucleoside-triphosphate reductase 0.91 HER17_RS18160 U32 family peptidase low > 75
Serratia liquefaciens MT49 0.87 IAI46_02135 anaerobic ribonucleoside-triphosphate reductase 0.87 IAI46_02015 U32 family peptidase low > 86
Rahnella sp. WP5 0.87 EX31_RS08395 anaerobic ribonucleoside-triphosphate reductase 0.91 EX31_RS08480 U32 family peptidase low > 89
Erwinia tracheiphila SCR3 0.81 LU632_RS20975 nrdD anaerobic ribonucleoside-triphosphate reductase 0.85 LU632_RS21005 U32 family peptidase low > 74
Shewanella oneidensis MR-1 0.80 SO2834 nrdD anaerobic ribonucleoside-triphosphate reductase (NCBI ptt file) 0.62 SO1249 peptidase, U32 family (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.79 Shewana3_2603 anaerobic ribonucleoside triphosphate reductase (RefSeq) 0.62 Shewana3_1065 peptidase U32 (RefSeq) low > 73
Pantoea sp. MT58 0.79 IAI47_16925 anaerobic ribonucleoside-triphosphate reductase 0.83 IAI47_16965 U32 family peptidase low > 76
Shewanella loihica PV-4 0.78 Shew_2449 anaerobic ribonucleoside triphosphate reductase (RefSeq) 0.61 Shew_2787 peptidase U32 (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.78 CSW01_16800 anaerobic ribonucleoside-triphosphate reductase 0.76 CSW01_03435 protease 0.48 58
Shewanella amazonensis SB2B 0.77 Sama_1275 anaerobic ribonucleoside triphosphate reductase (RefSeq) 0.59 Sama_0998 U32 family peptidase (RefSeq) low > 62
Pseudomonas simiae WCS417 0.09 PS417_15690 ribonucleoside-triphosphate reductase 0.64 PS417_15755 protease low > 88
Rhodospirillum rubrum S1H 0.09 Rru_A1276 ATP-cone (NCBI) 0.43 Rru_A2525 Peptidase U32 (NCBI) low > 58
Ralstonia solanacearum IBSBF1503 0.09 RALBFv3_RS16725 ribonucleoside triphosphate reductase 0.55 RALBFv3_RS16695 protease low > 76
Ralstonia solanacearum UW163 0.09 UW163_RS18080 ribonucleoside triphosphate reductase 0.55 UW163_RS18050 protease — —
Ralstonia solanacearum PSI07 0.09 RPSI07_RS06720 ribonucleoside triphosphate reductase 0.54 RPSI07_RS06750 U32 family peptidase low > 81
Pseudomonas sp. RS175 0.09 PFR28_01638 Anaerobic ribonucleoside-triphosphate reductase 0.65 PFR28_02214 putative protease YhbU low > 88
Pseudomonas fluorescens FW300-N2C3 0.09 AO356_25235 anaerobic ribonucleoside-triphosphate reductase 0.66 AO356_25160 protease 0.83 3
Pseudomonas fluorescens FW300-N2E2 0.09 Pf6N2E2_735 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) 0.66 Pf6N2E2_721 FIG139552: Putative protease 0.88 7
Ralstonia solanacearum GMI1000 0.09 RS_RS21760 ribonucleoside triphosphate reductase 0.50 RS_RS21795 U32 family peptidase low > 80
Pseudomonas fluorescens FW300-N2E3 0.09 AO353_22125 anaerobic ribonucleoside-triphosphate reductase 0.66 AO353_22050 protease low > 101
Kangiella aquimarina DSM 16071 0.09 B158DRAFT_1727 ribonucleoside-triphosphate reductase class III catalytic subunit (EC 1.17.4.2) 0.59 B158DRAFT_2375 Collagenase and related proteases low > 40
Pseudomonas fluorescens FW300-N1B4 0.08 Pf1N1B4_5729 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) 0.65 Pf1N1B4_5746 FIG139552: Putative protease 0.68 16
Acidovorax sp. GW101-3H11 0.08 Ac3H11_3312 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) 0.58 Ac3H11_4294 FIG139552: Putative protease low > 79
Pseudomonas stutzeri RCH2 0.08 Psest_0840 anaerobic ribonucleoside-triphosphate reductase 0.67 Psest_0835 Collagenase and related proteases low > 67

Not shown: 12 genomes with orthologs for b4238 only; 9 genomes with orthologs for b3158 only