Conservation of cofitness between b0060 and b1913 in Escherichia coli BW25113

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b0060 polB DNA polymerase II (NCBI) 1.0 b1913 uvrC excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) 0.56 5
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03598 DNA polymerase II 1.00 OHPLBJKB_01816 UvrABC system protein C low > 73
Escherichia coli BL21 1.00 ECD_00062 DNA polymerase II 1.00 ECD_01878 excinuclease UvrABC, endonuclease subunit low > 60
Escherichia coli ECOR27 0.99 NOLOHH_03140 polB DNA polymerase II 1.00 NOLOHH_16445 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECRC62 0.99 BNILDI_08465 polB DNA polymerase II 1.00 BNILDI_15235 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECRC99 0.99 KEDOAH_17360 polB DNA polymerase II 1.00 KEDOAH_02265 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECRC101 0.99 OKFHMN_10795 polB DNA polymerase II 1.00 OKFHMN_25825 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECRC101 0.99 MCAODC_01310 polB DNA polymerase II 1.00 MCAODC_19565 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECRC98 0.99 JDDGAC_14390 polB DNA polymerase II 1.00 JDDGAC_00415 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECRC102 0.99 NIAGMN_08645 polB DNA polymerase II 1.00 NIAGMN_02225 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECOR38 0.99 HEPCGN_08785 polB DNA polymerase II 1.00 HEPCGN_04180 uvrC excinuclease ABC subunit UvrC low > 85
Escherichia fergusonii Becca 0.98 EFB2_03985 DNA polymerase II 1.00 EFB2_02033 UvrABC system protein C low > 86
Escherichia coli Nissle 1917 0.98 ECOLIN_RS00320 DNA polymerase II 1.00 ECOLIN_RS10895 excinuclease ABC subunit UvrC low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF182 DNA polymerase II (EC 2.7.7.7) 0.96 GFF1700 Excinuclease ABC subunit C low > 78
Enterobacter sp. TBS_079 0.88 MPMX20_00754 DNA polymerase II 0.94 MPMX20_02838 UvrABC system protein C low > 85
Enterobacter asburiae PDN3 0.88 EX28DRAFT_3652 DNA polymerase elongation subunit (family B) 0.94 EX28DRAFT_0634 Excinuclease ABC subunit C low > 76
Klebsiella michiganensis M5al 0.84 BWI76_RS04575 DNA polymerase II 0.94 BWI76_RS18330 excinuclease ABC subunit C low > 92
Pantoea sp. MT58 0.77 IAI47_16050 DNA polymerase II 0.86 IAI47_12465 excinuclease ABC subunit UvrC low > 76
Erwinia tracheiphila SCR3 0.77 LU632_RS02810 polB DNA polymerase II 0.86 LU632_RS10195 uvrC excinuclease ABC subunit UvrC low > 74
Dickeya dadantii 3937 0.70 DDA3937_RS18230 DNA polymerase II 0.85 DDA3937_RS13700 excinuclease ABC subunit UvrC low > 74
Rahnella sp. WP5 0.70 EX31_RS03740 DNA polymerase II 0.83 EX31_RS24150 excinuclease ABC subunit UvrC 0.49 2
Dickeya dianthicola 67-19 0.70 HGI48_RS18165 DNA polymerase II 0.86 HGI48_RS13795 excinuclease ABC subunit UvrC low > 71
Serratia liquefaciens MT49 0.70 IAI46_03280 DNA polymerase II 0.86 IAI46_09210 excinuclease ABC subunit UvrC 0.85 4
Dickeya dianthicola ME23 0.69 DZA65_RS19305 DNA polymerase II 0.86 DZA65_RS14285 excinuclease ABC subunit UvrC low > 75
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS09335 DNA polymerase II 0.42 RR42_RS14000 excinuclease ABC subunit C 0.61 6
Pectobacterium carotovorum WPP14 0.69 HER17_RS02995 DNA polymerase II 0.87 HER17_RS07715 excinuclease ABC subunit UvrC low > 75
Pseudomonas fluorescens FW300-N2C3 0.68 AO356_01325 DNA polymerase II 0.51 AO356_00350 excinuclease ABC subunit C 0.50 4
Pseudomonas fluorescens FW300-N2E3 0.68 AO353_29350 DNA polymerase II 0.51 AO353_21835 excinuclease ABC subunit C 0.57 8
Pseudomonas fluorescens FW300-N2E2 0.68 Pf6N2E2_2137 DNA polymerase II (EC 2.7.7.7) 0.49 Pf6N2E2_2021 Excinuclease ABC subunit C 0.38 7
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_2472 DNA polymerase II (EC 2.7.7.7) 0.51 PfGW456L13_2886 Excinuclease ABC subunit C low > 87
Pseudomonas syringae pv. syringae B728a 0.67 Psyr_2361 DNA damage-inducible DNA polymerase II 0.51 Psyr_2896 Excinuclease ABC subunit C low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.67 Psyr_2361 DNA damage-inducible DNA polymerase II 0.51 Psyr_2896 Excinuclease ABC subunit C low > 86
Pseudomonas sp. RS175 0.67 PFR28_01299 DNA polymerase II 0.49 PFR28_01411 UvrABC system protein C low > 88
Pseudomonas fluorescens FW300-N1B4 0.67 Pf1N1B4_87 DNA polymerase II (EC 2.7.7.7) 0.51 Pf1N1B4_5618 Excinuclease ABC subunit C low > 87
Pseudomonas putida KT2440 0.67 PP_2393 DNA polymerase II 0.51 PP_4098 UvrABC system protein C low > 96
Pseudomonas simiae WCS417 0.67 PS417_09565 DNA polymerase II 0.51 PS417_10725 excinuclease ABC subunit C low > 88
Pseudomonas sp. S08-1 0.66 OH686_16850 DNA polymerase II 0.49 OH686_00340 excinuclease ABC subunit C low > 80
Pseudomonas stutzeri RCH2 0.66 Psest_1519 DNA polymerase elongation subunit (family B) 0.51 Psest_2259 excinuclease ABC, C subunit 0.35 5
Pseudomonas fluorescens SBW25-INTG 0.65 PFLU_RS10185 DNA polymerase II 0.51 PFLU_RS10770 excinuclease ABC subunit UvrC low > 109
Pseudomonas fluorescens SBW25 0.65 PFLU_RS10185 DNA polymerase II 0.51 PFLU_RS10770 excinuclease ABC subunit UvrC low > 109
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS12200 DNA polymerase II 0.42 HSERO_RS09690 excinuclease ABC subunit C 0.28 11
Variovorax sp. SCN45 0.55 GFF7213 DNA polymerase II (EC 2.7.7.7) 0.40 GFF2859 Excinuclease ABC subunit C low > 127
Vibrio cholerae E7946 ATCC 55056 0.50 CSW01_06130 DNA polymerase II 0.65 CSW01_06140 excinuclease ABC subunit C low > 62
Shewanella amazonensis SB2B 0.40 Sama_1250 DNA polymerase II (RefSeq) 0.60 Sama_1608 uvrC excinuclease ABC subunit C (RefSeq) 0.56 11
Alteromonas macleodii MIT1002 0.40 MIT1002_03358 DNA polymerase II 0.58 MIT1002_02153 Excinuclease ABC subunit C low > 70
Shewanella loihica PV-4 0.38 Shew_2482 DNA polymerase II (RefSeq) 0.58 Shew_1825 uvrC excinuclease ABC subunit C (RefSeq) 0.86 4
Shewanella oneidensis MR-1 0.38 SO1820 polB DNA polymerase II (NCBI ptt file) 0.58 SO1861 uvrC excinuclease ABC, C subunit (NCBI ptt file) 0.25 64
Shewanella sp. ANA-3 0.37 Shewana3_2629 DNA polymerase II (RefSeq) 0.58 Shewana3_1609 uvrC excinuclease ABC subunit C (RefSeq) low > 73

Not shown: 4 genomes with orthologs for b0060 only; 48 genomes with orthologs for b1913 only