Conservation of cofitness between Rru_A1263 and Rru_A0463 in Rhodospirillum rubrum S1H

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rhodospirillum rubrum S1H 1.0 Rru_A1263 Binding-protein-dependent transport systems inner membrane component (NCBI) 1.0 Rru_A0463 Alanine racemase-like (NCBI) 0.54 3
Dinoroseobacter shibae DFL-12 0.35 Dshi_3142 binding-protein-dependent transport systems inner membrane component (RefSeq) 0.21 Dshi_0889 alanine racemase domain protein (RefSeq) low > 64
Pseudomonas sp. RS175 0.32 PFR28_01711 Diacetylchitobiose uptake system permease protein DasC 0.10 PFR28_01389 D-threonine aldolase low > 88
Pseudomonas simiae WCS417 0.32 PS417_12705 ABC transporter for D-Mannitol and D-Sorbitol, permease component 1 (from data) 0.15 PS417_12910 alanine racemase low > 88
Pseudomonas fluorescens SBW25 0.31 PFLU_RS13395 carbohydrate ABC transporter permease 0.15 PFLU_RS19810 DSD1 family PLP-dependent enzyme low > 109
Pseudomonas fluorescens FW300-N2C3 0.31 AO356_27680 sugar ABC transporter permease 0.14 AO356_26790 alanine racemase low > 104
Pseudomonas fluorescens SBW25-INTG 0.31 PFLU_RS13395 carbohydrate ABC transporter permease 0.15 PFLU_RS19810 DSD1 family PLP-dependent enzyme low > 109
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_3040 Various polyols ABC transporter, permease component 2 0.10 PfGW456L13_2867 D-glucosaminate dehydratase (EC 4.3.1.9) (from data) low > 87
Pseudomonas fluorescens FW300-N1B4 0.31 Pf1N1B4_4848 Various polyols ABC transporter, permease component 2 0.12 Pf1N1B4_4210 Type III PLP / low-specificity D-threonine aldolase low > 87
Pseudomonas fluorescens FW300-N2E2 0.31 Pf6N2E2_808 Various polyols ABC transporter, permease component 2 0.14 Pf6N2E2_354 Type III PLP / low-specificity D-threonine aldolase low > 103
Pseudomonas fluorescens FW300-N2E3 0.31 AO353_25890 sugar ABC transporter permease 0.10 AO353_21740 D-glucosaminate dehydratase (EC 4.3.1.9) (from data) low > 101
Pseudomonas syringae pv. syringae B728a 0.31 Psyr_2438 sorbitol ABC transporter membrane protein / mannitol ABC transporter membrane protein 0.15 Psyr_3398 Alanine racemase, N-terminal low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.31 Psyr_2438 sorbitol ABC transporter membrane protein / mannitol ABC transporter membrane protein 0.15 Psyr_3398 Alanine racemase, N-terminal low > 86
Rhizobium sp. OAE497 0.28 ABIE40_RS17005 carbohydrate ABC transporter permease 0.41 ABIE40_RS21390 D-TA family PLP-dependent enzyme low > 107
Azospirillum sp. SherDot2 0.28 MPMX19_03650 Diacetylchitobiose uptake system permease protein NgcG 0.39 MPMX19_04017 D-threonine aldolase low > 112
Sinorhizobium meliloti 1021 0.27 SM_b21105 ABC transporter for L-Fucose, permease component 2 (from data) 0.61 SM_b21134 amino acid processing enzyme, low specificity D-threonine aldolase low > 103
Paraburkholderia sabiae LMG 24235 0.26 QEN71_RS10190 carbohydrate ABC transporter permease 0.17 QEN71_RS14275 DSD1 family PLP-dependent enzyme low > 153
Pantoea sp. MT58 0.26 IAI47_20090 carbohydrate ABC transporter permease 0.19 IAI47_00550 alanine racemase low > 76
Paraburkholderia graminis OAS925 0.26 ABIE53_004522 glycerol transport system permease protein 0.15 ABIE53_002131 D-serine deaminase-like pyridoxal phosphate-dependent protein low > 113
Paraburkholderia bryophila 376MFSha3.1 0.26 H281DRAFT_03731 carbohydrate ABC transporter membrane protein 2, CUT1 family 0.16 H281DRAFT_03260 D-serine deaminase, pyridoxal phosphate-dependent low > 103
Serratia liquefaciens MT49 0.25 IAI46_11760 carbohydrate ABC transporter permease 0.13 IAI46_02295 amino acid deaminase low > 86
Herbaspirillum seropedicae SmR1 0.25 HSERO_RS04860 sugar ABC transporter permease 0.16 HSERO_RS05720 alanine racemase low > 78
Burkholderia phytofirmans PsJN 0.25 BPHYT_RS33285 sugar ABC transporter permease 0.15 BPHYT_RS28865 alanine racemase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.25 GFF2812 Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3) 0.18 GFF1662 low-specificity D-threonine aldolase low > 90
Variovorax sp. OAS795 0.25 ABID97_RS19935 carbohydrate ABC transporter permease 0.20 ABID97_RS14455 DSD1 family PLP-dependent enzyme low > 91
Bosea sp. OAE506 0.24 ABIE41_RS08840 carbohydrate ABC transporter permease 0.38 ABIE41_RS21990 D-TA family PLP-dependent enzyme low > 77
Ralstonia solanacearum IBSBF1503 0.24 RALBFv3_RS07380 carbohydrate ABC transporter permease 0.15 RALBFv3_RS05660 alanine racemase low > 76
Ralstonia solanacearum GMI1000 0.24 RS_RS10740 carbohydrate ABC transporter permease 0.16 RS_RS13550 DSD1 family PLP-dependent enzyme low > 80
Ralstonia solanacearum UW163 0.24 UW163_RS06240 carbohydrate ABC transporter permease 0.15 UW163_RS07965 alanine racemase — —
Ralstonia sp. UNC404CL21Col 0.24 ABZR87_RS18680 carbohydrate ABC transporter permease 0.15 ABZR87_RS16410 DSD1 family PLP-dependent enzyme low > 80
Cupriavidus basilensis FW507-4G11 0.24 RR42_RS13775 sugar ABC transporter permease 0.18 RR42_RS28440 alanine racemase low > 128
Ralstonia solanacearum PSI07 0.24 RPSI07_RS09865 carbohydrate ABC transporter permease 0.08 RPSI07_RS05450 amino acid deaminase low > 81
Acidovorax sp. GW101-3H11 0.23 Ac3H11_794 ABC transporter for Glycerol, permease component 2 (from data) 0.17 Ac3H11_1814 low-specificity D-threonine aldolase low > 79
Variovorax sp. SCN45 0.23 GFF5274 Various polyols ABC transporter, permease protein 2 0.20 GFF1049 low-specificity D-threonine aldolase low > 127

Not shown: 15 genomes with orthologs for Rru_A1263 only; 7 genomes with orthologs for Rru_A0463 only