| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Pseudomonas syringae pv. syringae B728a | Psyr_0623 | | Peptidase S24, S26A and S26B | insig. | 100 | 100 |
| o | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_0623 | | Peptidase S24, S26A and S26B | insig. | 100 | 100 |
| o | Pseudomonas fluorescens FW300-N2E3 | AO353_06600 | | transcriptional regulator | sig. | 51 | 96 |
| o | Pseudomonas fluorescens SBW25 | PFLU_RS26785 | | helix-turn-helix transcriptional regulator | insig. | 51 | 100 |
| o | Pseudomonas fluorescens SBW25-INTG | PFLU_RS26785 | | helix-turn-helix transcriptional regulator | insig. | 51 | 100 |
| o | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_2665 | | Transcriptional regulator | sig. | 49 | 100 |
| o | Pseudomonas lactucae CFBP13502 | GEMAOFIL_05125 | | HTH-type transcriptional regulator PrtR | cofit | 51 | 100 |
| o | Pseudomonas simiae WCS417 | PS417_24850 | | transcriptional regulator | insig. | 48 | 100 |
| o | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_4971 | | Transcriptional regulator | insig. | 49 | 97 |
| o | Pseudomonas orientalis W4I3 | QF045_RS27135 | | helix-turn-helix transcriptional regulator | insig. | 49 | 100 |
| o | Pseudomonas fluorescens FW300-N2C3 | AO356_15185 | | transcriptional regulator | insig. | 48 | 97 |
| o | Pseudomonas sp. RS175 | PFR28_03894 | | HTH-type transcriptional regulator PrtR | insig. | 48 | 97 |
| o | Pseudomonas sp. DMC3 | GFF3850 | | HTH-type transcriptional regulator PrtR | insig. | 47 | 100 |
| o | Pseudomonas sp. SVBP6 | COO64_RS15735 | | XRE family transcriptional regulator | insig. | 45 | 98 |
| o | Pseudomonas fluorescens GW456-L13 | PfGW456L13_1334 | | Transcriptional regulator | sig. | 47 | 100 |
| o | Pseudomonas putida KT2440 | PP_0537 | | putative transcriptional regulator | insig. | 43 | 98 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS23085 | prtR;inference=COORDINATES | transcriptional regulator PrtR | no data | 41 | 81 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_22355 | | HTH-type transcriptional regulator PrtR | no data | 41 | 81 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS36265 | prtR;inference=COORDINATES | transcriptional regulator PrtR | no data | 41 | 81 |
| | Shewanella oneidensis MR-1 | SO2990 | | prophage LambdaSo, transcriptional regulator, Cro/CI family (NCBI ptt file) | no data | 41 | 59 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS07925 | alpR;inference=COORDINATES | transcriptional regulator AlpR | no data | 33 | 94 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_04055 | | transcriptional regulator AlpR | no data | 33 | 94 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS44875 | alpR;inference=COORDINATES | transcriptional regulator AlpR | no data | 33 | 94 |
| | Marinobacter adhaerens HP15 | HP15_685 | | phage repressor | no data | 42 | 57 |
| | Pseudomonas sp. RS175 | PFR28_02698 | | HTH-type transcriptional regulator PrtR | no data | 31 | 94 |
| | Erwinia tracheiphila SCR3 | LU632_RS15100 | | helix-turn-helix transcriptional regulator | no data | 40 | 57 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01325 | | HTH-type transcriptional regulator PrtR | cofit | 40 | 58 |
| | Pseudomonas simiae WCS417 | PS417_05695 | | transcriptional regulator | strong | 40 | 58 |
| | Pseudomonas sp. DMC3 | GFF2087 | | HTH-type transcriptional regulator PrtR | no data | 35 | 76 |
| o | Acinetobacter radioresistens SK82 | MPMX26_01389 | | HTH-type transcriptional regulator PrtR | no data | 29 | 94 |
| | Pseudomonas orientalis W4I3 | QF045_RS08620 | | S24 family peptidase | cofit | 40 | 58 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS05780 | | helix-turn-helix transcriptional regulator | cofit | 40 | 58 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS05780 | | helix-turn-helix transcriptional regulator | strong | 40 | 58 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_16630 | | transcriptional regulator | no data | 34 | 76 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3118 | | Transcriptional regulator, Cro/CI family | no data | 33 | 76 |
| | Pseudomonas sp. SVBP6 | COO64_RS19810 | | XRE family transcriptional regulator | no data | 34 | 76 |
| o | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_21390 | | Helix-turn-helix transcriptional regulator | no data | 27 | 98 |
| | Erwinia tracheiphila SCR3 | LU632_RS14255 | | helix-turn-helix transcriptional regulator | no data | 27 | 98 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_4671 | | Transcriptional regulator, Cro/CI family | strong | 38 | 56 |
| | Pseudomonas sp. RS175 | PFR28_00431 | | HTH-type transcriptional regulator PrtR | no data | 37 | 58 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3031 | | Transcriptional regulator, Cro/CI family | no data | 37 | 58 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_05865 | | transcriptional regulator | no data | 37 | 58 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5718 | | Transcriptional regulator, Cro/CI family | insig. | 36 | 56 |
| o | Enterobacter sp. TBS_079 | MPMX20_02914 | | HTH-type transcriptional regulator PrtR | no data | 29 | 98 |
| o | Serratia liquefaciens MT49 | IAI46_15200 | | helix-turn-helix transcriptional regulator | no data | 26 | 95 |
| | Serratia liquefaciens MT49 | IAI46_13755 | | helix-turn-helix transcriptional regulator | no data | 31 | 56 |
| | Serratia liquefaciens MT49 | IAI46_17130 | | helix-turn-helix transcriptional regulator | insig. | 35 | 42 |
| | Pectobacterium carotovorum WPP14 | HER17_RS11585 | | helix-turn-helix transcriptional regulator | no data | 28 | 78 |
| | Acinetobacter baumannii LAC-4 | RR41_RS10280 | | LexA family transcriptional regulator | no data | 28 | 74 |
| | Shewanella oneidensis MR-1 | SO0641 | | prophage MuSo1, transcriptional regulator, Cro/CI family (NCBI ptt file) | no data | 28 | 86 |
| o | Desulfovibrio vulgaris Miyazaki F | DvMF_1261 | | putative phage repressor (RefSeq) | no data | 26 | 86 |
| | Marinobacter adhaerens HP15 | HP15_3106 | | phage repressor | no data | 25 | 87 |
| | Methylophilus sp. DMC18 | GFF2350 | | putative HTH-type transcriptional regulator | no data | 24 | 56 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS22040 | | S24 family peptidase | no data | 29 | 42 |
| | Variovorax sp. SCN45 | GFF3233 | | hypothetical protein | no data | 34 | 40 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_26340 | | hypothetical protein | no data | 29 | 39 |
| | Rhodospirillum rubrum S1H | Rru_A0717 | | phage repressor (NCBI) | insig. | 27 | 68 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU2686 | | peptidase, S24 family (TIGR) | no data | 24 | 91 |
| | Pseudomonas sp. SVBP6 | COO64_RS08775 | | S24 family peptidase | insig. | 32 | 46 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS02430 | | LexA family transcriptional regulator | no data | 25 | 91 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_0352 | | putative phage repressor (RefSeq) | no data | 32 | 38 |
| | Klebsiella michiganensis M5al | BWI76_RS12075 | | regulator | no data | 32 | 28 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU1144 | | transcriptional regulator, Cro/CI family (TIGR) | no data | 24 | 78 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_0710 | | putative phage repressor (RefSeq) | no data | 23 | 76 |
| | Sphingobium sp. HT1-2 | GFF612 | | putative phage repressor | no data | 25 | 82 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS01095 | | hypothetical protein | insig. | 29 | 40 |