Homologs of PFR28_00559 from Pseudomonas sp. RS175

ECF RNA polymerase sigma factor SigE
SEED: FIG006045: Sigma factor, ECF subfamily

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas sp. RS175 PFR28_00559 ECF RNA polymerase sigma factor SigE insig. 100 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2900 FIG006045: Sigma factor, ECF subfamily insig. 90 98
o Pseudomonas fluorescens FW300-N2C3 AO356_05230 RNA polymerase subunit sigma-24 insig. 88 98
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_604 FIG006045: Sigma factor, ECF subfamily insig. 80 100
o Pseudomonas fluorescens FW300-N2E3 AO353_03435 RNA polymerase subunit sigma-24 insig. 81 99
o Pseudomonas fluorescens GW456-L13 PfGW456L13_1886 FIG006045: Sigma factor, ECF subfamily insig. 78 100
o Pseudomonas fluorescens SBW25 PFLU_RS24340 sigma-70 family RNA polymerase sigma factor insig. 77 99
o Pseudomonas fluorescens SBW25-INTG PFLU_RS24340 sigma-70 family RNA polymerase sigma factor strong 77 99
o Pseudomonas simiae WCS417 PS417_22700 RNA polymerase subunit sigma-24 strong 77 99
o Pseudomonas putida KT2440 PP_1008 RNA polymerase subunit sigma-24 strong 73 98
o Pseudomonas syringae pv. syringae B728a Psyr_1107 Sigma-70 region 2 insig. 72 99
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1107 Sigma-70 region 2 insig. 72 99
o Azospirillum brasilense Sp245 AZOBR_RS26615 RNA polymerase insig. 46 94
  Rhodospirillum rubrum S1H Rru_A2372 Sigma-24 (FecI) (NCBI) insig. 38 94
  Azospirillum brasilense Sp245 AZOBR_RS30810 RNA polymerase sigma70 insig. 37 94
  Pseudomonas putida KT2440 PP_4608 RNA polymerase sigma-70 factor, ECF subfamily insig. 36 94
  Pseudomonas fluorescens SBW25 PFLU_RS05190 RNA polymerase sigma factor insig. 33 94
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05190 RNA polymerase sigma factor insig. 33 94
  Pseudomonas simiae WCS417 PS417_05120 RNA polymerase subunit sigma-24 insig. 33 94
  Pseudomonas fluorescens FW300-N2E3 AO353_04915 RNA polymerase subunit sigma-24 insig. 35 94
  Pseudomonas fluorescens FW300-N2C3 AO356_22495 RNA polymerase subunit sigma-24 insig. 35 89
o Rhodopseudomonas palustris CGA009 TX73_012350 RNA polymerase sigma factor insig. 35 94
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4951 FIG006045: Sigma factor, ECF subfamily insig. 34 93
  Azospirillum sp. SherDot2 MPMX19_03082 ECF RNA polymerase sigma factor SigE insig. 32 90
  Pseudomonas sp. RS175 PFR28_02540 putative RNA polymerase sigma factor FecI insig. 33 89
  Pseudomonas fluorescens SBW25 PFLU_RS26350 RNA polymerase sigma factor insig. 31 95
  Pseudomonas fluorescens SBW25-INTG PFLU_RS26350 RNA polymerase sigma factor sig. 31 95
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_398 FIG006045: Sigma factor, ECF subfamily insig. 33 89
  Pseudomonas simiae WCS417 PS417_24420 RNA polymerase sigma70 no data 31 95
  Azospirillum brasilense Sp245 AZOBR_RS29160 putative RNA polymerase sigma-70 factor ECF subfamily insig. 29 90
  Azospirillum sp. SherDot2 MPMX19_03247 putative RNA polymerase sigma factor FecI insig. 28 94
  Azospirillum brasilense Sp245 AZOBR_RS23325 RNA polymerase sigma70 insig. 28 94
  Alteromonas macleodii MIT1002 MIT1002_03920 putative RNA polymerase sigma factor FecI cofit 27 93
  Pectobacterium carotovorum WPP14 HER17_RS14055 sigma-70 family RNA polymerase sigma factor insig. 34 96
  Azospirillum sp. SherDot2 MPMX19_03088 putative RNA polymerase sigma factor FecI insig. 32 83
  Dechlorosoma suillum PS Dsui_1673 RNA polymerase sigma factor, sigma-70 family no data 30 81
  Azospirillum brasilense Sp245 AZOBR_RS27315 RNA polymerase sigma 70 insig. 32 83
  Variovorax sp. SCN45 GFF1525 RNA polymerase ECF-type sigma factor insig. 32 90
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS09540 sigma-70 family RNA polymerase sigma factor no data 32 84
  Pseudomonas fluorescens SBW25 PFLU_RS06940 sigma-70 family RNA polymerase sigma factor insig. 31 86
  Pseudomonas fluorescens SBW25-INTG PFLU_RS06940 sigma-70 family RNA polymerase sigma factor sig. 31 86
  Rhodospirillum rubrum S1H Rru_A1438 Sigma-24 (FecI) (NCBI) cofit 31 81
  Variovorax sp. SCN45 GFF99 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 31 89
  Phocaeicola dorei CL03T12C01 ABI39_RS02030 RNA polymerase sigma-70 factor insig. 32 88
  Pseudomonas simiae WCS417 PS417_06880 RNA polymerase sigma factor insig. 29 86
  Variovorax sp. SCN45 GFF1645 Sigma factor PvdS, controling pyoverdin biosynthesis insig. 30 90
  Pseudomonas sp. RS175 PFR28_02859 putative RNA polymerase sigma factor FecI insig. 31 84
  Pseudomonas sp. S08-1 OH686_01025 hypothetical protein insig. 25 90
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09435 RNA polymerase sigma factor insig. 30 91
  Dechlorosoma suillum PS Dsui_2948 RNA polymerase sigma factor, sigma-70 family insig. 31 97
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2440 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 30 85
  Pseudomonas fluorescens SBW25 PFLU_RS28550 RNA polymerase sigma factor insig. 28 92
  Pseudomonas fluorescens SBW25-INTG PFLU_RS28550 RNA polymerase sigma factor insig. 28 92
  Alteromonas macleodii MIT1002 MIT1002_01237 Sigma-24 cofit 27 93
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3041 RNA polymerase sigma factor, sigma-70 family insig. 34 94
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2727 FIG006045: Sigma factor, ECF subfamily insig. 30 83
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_118 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 29 86
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS24305 hypothetical protein sig. 27 95
  Dechlorosoma suillum PS Dsui_0621 RNA polymerase sigma factor, sigma-70 family insig. 27 86
  Pseudomonas stutzeri RCH2 Psest_0650 RNA polymerase sigma factor, sigma-70 family insig. 31 89
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3656 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 27 75
  Pseudomonas simiae WCS417 PS417_00670 RNA polymerase sigma factor sig. 30 96
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1181 FIG006045: Sigma factor, ECF subfamily insig. 30 85
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_29 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 29 85
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_216 Sigma factor PvdS, controling pyoverdin biosynthesis insig. 29 91
  Variovorax sp. OAS795 ABID97_RS21515 sigma-70 family RNA polymerase sigma factor no data 27 85
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS13700 hypothetical protein insig. 25 91
  Variovorax sp. SCN45 GFF1723 Extracytoplasmic function (ECF) sigma factor VreI no data 30 90
  Pectobacterium carotovorum WPP14 HER17_RS21290 sigma-70 family RNA polymerase sigma factor insig. 33 81
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2293 Sigma factor PvdS, controling pyoverdin biosynthesis insig. 29 89
  Pseudomonas fluorescens FW300-N2E3 AO353_19345 RNA polymerase subunit sigma-70 insig. 29 92
  Bacteroides thetaiotaomicron VPI-5482 BT1817 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 27 88
  Pseudomonas sp. RS175 PFR28_01023 hypothetical protein sig. 29 89
  Pseudomonas fluorescens FW300-N2C3 AO356_02895 RNA polymerase subunit sigma-70 strong 29 89
  Pseudomonas fluorescens FW300-N2C3 AO356_21215 RNA polymerase subunit sigma-24 insig. 29 85
  Variovorax sp. SCN45 GFF784 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 30 84
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS15920 sigma-70 family RNA polymerase sigma factor insig. 30 91
  Serratia liquefaciens MT49 IAI46_11745 sigma-70 family RNA polymerase sigma factor no data 28 83
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09360 RNA polymerase sigma factor insig. 28 97
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09420 RNA polymerase sigma factor sig. 28 91
  Dechlorosoma suillum PS Dsui_2977 RNA polymerase sigma factor, sigma-70 family insig. 32 81
  Pseudomonas putida KT2440 PP_0704 RNA polymerase sigma-70 factor, ECF subfamily strong 31 91
  Pseudomonas fluorescens SBW25 PFLU_RS21525 RNA polymerase factor sigma-70 insig. 28 89
  Pseudomonas fluorescens SBW25-INTG PFLU_RS21525 RNA polymerase factor sigma-70 sig. 28 89
  Pseudomonas simiae WCS417 PS417_19555 RNA polymerase sigma70 strong 28 89
  Herbaspirillum seropedicae SmR1 HSERO_RS12165 RNA polymerase sigma factor insig. 32 97
  Variovorax sp. SCN45 GFF6854 RNA polymerase ECF-type sigma factor insig. 32 95
  Pseudomonas fluorescens GW456-L13 PfGW456L13_3565 heme uptake regulator insig. 31 83
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0778 RNA polymerase sigma factor, sigma-70 family insig. 31 85
  Mycobacterium tuberculosis H37Rv Rv1221 Alternative RNA polymerase sigma factor SigE insig. 30 81
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2394 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 29 80
  Pseudomonas simiae WCS417 PS417_09740 RNA polymerase subunit sigma-24 insig. 29 94
  Pseudomonas putida KT2440 PP_4244 alternative sigma factor sig. 28 94
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11895 hypothetical protein insig. 28 89
  Pseudomonas fluorescens FW300-N2C3 AO356_21175 RNA polymerase subunit sigma strong 29 85
  Bacteroides ovatus ATCC 8483 BACOVA_02944 RNA polymerase sigma-70 factor insig. 28 72
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS00640 sigma-70 family RNA polymerase sigma factor cofit 29 85
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2404 Sigma factor PvdS, controling pyoverdin biosynthesis sig. 29 87
  Pseudomonas syringae pv. syringae B728a Psyr_1943 Sigma-70 region 2 strong 32 78
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1943 Sigma-70 region 2 sig. 32 78