Homologs of HMPREF1058_RS10275 from Phocaeicola vulgatus CL09T03C04

RNA-splicing ligase RtcB
SEED: Protein RtcB

62 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS10275 RNA-splicing ligase RtcB strong 100 100
o Phocaeicola dorei CL03T12C01 ABI39_RS19560 RNA-splicing ligase RtcB insig. 42 97
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_5793 Protein RtcB insig. 31 99
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS09560 RtcB family protein insig. 31 99
o Acidovorax sp. GW101-3H11 Ac3H11_1977 Protein RtcB insig. 31 98
o Bacteroides ovatus ATCC 8483 BACOVA_02429 hypothetical protein insig. 31 96
o Lysobacter sp. OAE881 ABIE51_RS18530 RtcB family protein insig. 31 95
o Pseudomonas sp. RS175 PFR28_01832 RNA-splicing ligase RtcB insig. 29 99
o Pseudomonas sp. S08-1 OH686_16250 RNA-2',3'-PO4:RNA-5'-OH ligase insig. 30 99
o Cupriavidus basilensis FW507-4G11 RR42_RS23340 RNA ligase insig. 31 99
o Variovorax sp. SCN45 GFF2252 RNA-2',3'-PO4:RNA-5'-OH ligase sig. 31 97
o Variovorax sp. OAS795 ABID97_RS24130 RtcB family protein insig. 31 97
o Ralstonia sp. UNC404CL21Col ABZR87_RS05940 RtcB family protein insig. 31 97
o Pectobacterium carotovorum WPP14 HER17_RS19320 RtcB family protein insig. 30 97
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4930.1 RNA-2',3'-PO4:RNA-5'-OH ligase insig. 29 95
o Ralstonia solanacearum PSI07 RPSI07_RS23040 RtcB family protein insig. 31 97
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF595 'RNA-2',3'-PO4:RNA-5'-OH ligase' transl_table=11 insig. 30 98
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS10305 RtcB family protein insig. 31 97
o Ralstonia solanacearum UW163 UW163_RS03275 RtcB family protein insig. 31 97
o Escherichia coli ECOR38 HEPCGN_15770 rtcB RNA-splicing ligase RtcB insig. 30 94
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00283 RNA-splicing ligase RtcB insig. 30 94
o Escherichia fergusonii Becca EFB2_00408 RNA-splicing ligase RtcB insig. 30 94
o Escherichia coli BL21 ECD_03272 RNA-splicing ligase insig. 30 94
o Escherichia coli Nissle 1917 ECOLIN_RS19530 RNA-splicing ligase RtcB insig. 30 94
o Escherichia coli BW25113 b3421 rtcB hypothetical protein (NCBI) insig. 30 94
o Ralstonia solanacearum GMI1000 RS_RS01110 RtcB family protein insig. 31 97
o Escherichia coli ECRC100 OKFHMN_16950 rtcB RNA-splicing ligase RtcB cofit 30 94
o Escherichia coli ECRC101 MCAODC_07480 rtcB RNA-splicing ligase RtcB insig. 30 94
o Escherichia coli ECRC102 NIAGMN_14720 rtcB RNA-splicing ligase RtcB insig. 30 94
o Escherichia coli ECRC99 KEDOAH_11190 rtcB RNA-splicing ligase RtcB no data 30 94
o Escherichia coli ECOR27 NOLOHH_08745 rtcB RNA-splicing ligase RtcB insig. 30 94
o Escherichia coli ECRC62 BNILDI_02770 rtcB RNA-splicing ligase RtcB cofit 30 94
o Desulfovibrio vulgaris Hildenborough JW710 DVU0853 conserved hypothetical protein (TIGR) insig. 27 95
o Escherichia coli ECRC98 JDDGAC_20580 rtcB RNA-splicing ligase RtcB cofit 29 94
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS18465 RNA-splicing ligase RtcB insig. 28 97
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS05315 RtcB family protein insig. 30 87
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS11270 RtcB family protein insig. 27 96
  Variovorax sp. OAS795 ABID97_RS05650 RtcB family protein insig. 28 95
o Bacteroides thetaiotaomicron VPI-5482 BT1455 protein rtcB (NCBI ptt file) sig. 28 97
  Bacteroides ovatus ATCC 8483 BACOVA_04144 hypothetical protein insig. 28 97
  Escherichia coli ECOR38 HEPCGN_01325 RNA-splicing ligase RtcB insig. 28 92
  Pectobacterium carotovorum WPP14 HER17_RS03350 RtcB family protein insig. 25 98
  Escherichia coli ECOR27 NOLOHH_02085 rtcB RNA ligase RtcB family protein cofit 25 95
  Pectobacterium carotovorum WPP14 HER17_RS03875 RNA ligase RtcB family protein insig. 26 98
  Escherichia coli Nissle 1917 ECOLIN_RS01790 RNA ligase RtcB family protein insig. 25 95
  Escherichia coli ECRC62 BNILDI_00280 rtcB RNA ligase RtcB family protein cofit 25 95
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03405 RNA-splicing ligase RtcB insig. 25 95
  Escherichia fergusonii Becca EFB2_03785 RNA-splicing ligase RtcB insig. 25 95
  Escherichia coli ECOR38 HEPCGN_07815 rtcB RNA ligase RtcB family protein insig. 26 95
  Desulfovibrio vulgaris Miyazaki F DvMF_2898 protein of unknown function UPF0027 (RefSeq) insig. 40 29
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS20225 RNA ligase RtcB family protein sig. 23 95
  Ralstonia solanacearum UW163 UW163_RS18950 RNA ligase RtcB family protein insig. 23 95
  Methanococcus maripaludis S2 MMP_RS07165 RNA-splicing ligase RtcB no data 23 93
  Methanococcus maripaludis JJ MMJJ_RS07190 RtcB family protein strong 24 93
  Ralstonia solanacearum PSI07 RPSI07_RS02635 RNA ligase RtcB family protein strong 23 95
  Ralstonia sp. UNC404CL21Col ABZR87_RS20790 RNA ligase RtcB family protein insig. 25 88
  Ralstonia solanacearum GMI1000 RS_RS20480 RNA ligase RtcB family protein insig. 23 95
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS07935 hypothetical protein insig. 32 40
  Ralstonia solanacearum UW163 UW163_RS05690 hypothetical protein insig. 32 40
o Mycobacterium tuberculosis H37Rv Rv2631 Conserved hypothetical protein insig. 26 88
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4105 Protein with similarity to RtcB insig. 27 41
  Desulfovibrio vulgaris Miyazaki F DvMF_2898 protein of unknown function UPF0027 (RefSeq) insig. 27 42