Homologs of SO2204 from Shewanella oneidensis MR-1

DNA ligase, ATP-dependent (NCBI ptt file)
SEED: DNA ligase (ATP) (EC 6.5.1.1)
KEGG: DNA ligase (ATP)

39 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella oneidensis MR-1 SO2204 DNA ligase, ATP-dependent (NCBI ptt file) insig. 100 100
o Shewanella sp. ANA-3 Shewana3_2401 DNA ligase (RefSeq) insig. 75 97
o Dechlorosoma suillum PS Dsui_2466 ATP dependent DNA ligase-like protein insig. 49 84
o Shewanella loihica PV-4 Shew_1587 DNA ligase (RefSeq) insig. 52 83
o Marinobacter adhaerens HP15 HP15_3457 ATP dependent DNA ligase insig. 48 87
o Methylophilus sp. DMC18 GFF1092 DNA ligase insig. 44 88
o Acidovorax sp. GW101-3H11 Ac3H11_2913 DNA ligase (ATP) (EC 6.5.1.1) insig. 48 77
o Shewanella amazonensis SB2B Sama_1995 DNA ligase (RefSeq) insig. 48 85
o Variovorax sp. OAS795 ABID97_RS16530 DNA ligase insig. 45 77
o Alteromonas macleodii MIT1002 MIT1002_00773 DNA ligase insig. 41 84
o Variovorax sp. SCN45 GFF231 DNA ligase (ATP) (EC 6.5.1.1) insig. 43 83
o Vibrio cholerae E7946 ATCC 55056 CSW01_07745 DNA ligase cofit 38 87
  Pseudomonas aeruginosa PA14 IKLFDK_10445 DNA ligase D sig. 29 65
  Pseudomonas aeruginosa PUPa3 DQ20_RS39205 ligD;go_process=double-strand DNA ligase D insig. 29 65
  Variovorax sp. SCN45 GFF6242 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD insig. 28 58
  Pseudomonas aeruginosa MRSN321 DY961_RS16935 ligD;go_process=double-strand DNA ligase D insig. 28 65
  Pseudomonas putida KT2440 PP_3260 DNA ligase D insig. 28 62
  Pseudomonas syringae pv. syringae B728a Psyr_3245 ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module insig. 28 59
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3245 ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module insig. 28 59
  Pseudomonas lactucae CFBP13502 GEMAOFIL_03237 Multifunctional non-homologous end joining protein LigD cofit 26 74
  Pseudomonas sp. BP01 JOY50_RS26485 ligD DNA ligase D insig. 29 57
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.140.1 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD insig. 29 65
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3858 DNA ligase D insig. 23 66
  Ralstonia solanacearum PSI07 RPSI07_RS21105 DNA ligase D insig. 28 67
  Agrobacterium fabrum C58 Atu5051 ATP-dependent DNA ligase insig. 26 59
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01036 DNA ligase D, ligase domain-containing protein no data 29 45
  Pseudomonas simiae WCS417 PS417_13125 ATP-dependent DNA ligase insig. 27 59
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS18180 WGR domain-containing protein insig. 27 57
  Pseudomonas stutzeri RCH2 Psest_2179 DNA ligase D insig. 27 60
  Sphingobium sp. HT1-2 GFF5134 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD cofit 25 56
  Pseudomonas sp. SVBP6 COO64_RS24640 ligD DNA ligase D insig. 25 62
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF111 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD insig. 28 62
  Lysobacter sp. OAE881 ABIE51_RS12760 DNA ligase D insig. 27 51
  Pseudomonas fluorescens SBW25 PFLU_RS14185 DNA ligase D insig. 27 71
  Pseudomonas fluorescens SBW25-INTG PFLU_RS14185 DNA ligase D insig. 27 71
  Pseudomonas sp. S08-1 OH686_01425 DNA ligase D cofit 27 59
  Pseudomonas orientalis W4I3 QF045_RS16850 DNA ligase D insig. 25 74
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2247.1 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD insig. 28 50
  Ralstonia sp. UNC404CL21Col ABZR87_RS08115 DNA ligase D insig. 27 71