Conservation of cofitness between Xcc-8004.558.1 and Xcc-8004.1661.1 in Xanthomonas campestris pv. campestris strain 8004

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.558.1 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) 1.0 Xcc-8004.1661.1 Ribosome hibernation protein YhbH 0.35 3
Cupriavidus basilensis FW507-4G11 0.70 RR42_RS29305 short-chain dehydrogenase 0.35 RR42_RS02080 ribosome hibernation promoting factor low > 128
Ralstonia solanacearum GMI1000 0.69 RS_RS16080 oxidoreductase 0.34 RS_RS02015 ribosomal subunit interface protein low > 80
Ralstonia solanacearum IBSBF1503 0.69 RALBFv3_RS20890 oxidoreductase 0.34 RALBFv3_RS11165 ribosomal subunit interface protein low > 76
Ralstonia solanacearum UW163 0.69 UW163_RS22025 oxidoreductase 0.34 UW163_RS02415 ribosomal subunit interface protein — —
Dickeya dianthicola ME23 0.68 DZA65_RS08505 oxidoreductase 0.34 DZA65_RS01505 ribosome hibernation promoting factor low > 75
Ralstonia sp. UNC404CL21Col 0.68 ABZR87_RS17640 oxidoreductase 0.36 ABZR87_RS07055 ribosome-associated translation inhibitor RaiA low > 80
Dickeya dianthicola 67-19 0.67 HGI48_RS07910 oxidoreductase 0.34 HGI48_RS01440 ribosome hibernation promoting factor low > 71
Dyella japonica UNC79MFTsu3.2 0.67 ABZR86_RS20760 oxidoreductase 0.32 ABZR86_RS19810 ribosome-associated translation inhibitor RaiA low > 74
Ralstonia solanacearum PSI07 0.66 RPSI07_RS15460 oxidoreductase 0.34 RPSI07_RS22135 ribosomal subunit interface protein low > 81
Dickeya dadantii 3937 0.66 DDA3937_RS03805 oxidoreductase 0.35 DDA3937_RS01525 ribosome hibernation promoting factor low > 74
Pseudomonas aeruginosa PA14 0.66 IKLFDK_06525 short-chain dehydrogenase/reductase 0.43 IKLFDK_01765 Sigma 54 modulation protein / S30EA ribosomal protein low > 100
Burkholderia phytofirmans PsJN 0.44 BPHYT_RS10170 oxidoreductase 0.37 BPHYT_RS02900 ribosome hibernation promoting factor low > 109
Paraburkholderia graminis OAS925 0.43 ABIE53_005425 NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) 0.38 ABIE53_000717 putative sigma-54 modulation protein low > 113
Pectobacterium carotovorum WPP14 0.41 HER17_RS14300 oxidoreductase 0.34 HER17_RS20065 ribosome hibernation promoting factor low > 75
Pseudomonas fluorescens SBW25 0.40 PFLU_RS16275 oxidoreductase 0.37 PFLU_RS04395 ribosome-associated translation inhibitor RaiA low > 109
Pseudomonas fluorescens SBW25-INTG 0.40 PFLU_RS16275 oxidoreductase 0.37 PFLU_RS04395 ribosome-associated translation inhibitor RaiA low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.40 Psyr_3541 Short-chain dehydrogenase/reductase SDR 0.39 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P low > 86
Pseudomonas syringae pv. syringae B728a 0.40 Psyr_3541 Short-chain dehydrogenase/reductase SDR 0.39 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P low > 86
Enterobacter sp. TBS_079 0.40 MPMX20_02560 hypothetical protein 0.36 MPMX20_04109 Ribosome hibernation promoting factor low > 85
Rahnella sp. WP5 0.39 EX31_RS11050 oxidoreductase 0.33 EX31_RS12395 ribosome hibernation promoting factor low > 89
Pantoea agglomerans CFBP13505 P0401 0.39 PagCFBP13505_RS14420 oxidoreductase 0.31 PagCFBP13505_RS09355 ribosome hibernation promoting factor low > 74
Pantoea sp. MT58 0.37 IAI47_20865 oxidoreductase 0.31 IAI47_17190 ribosome hibernation promoting factor 0.35 65
Pseudomonas segetis P6 0.23 MPMX49_03580 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase 0.41 MPMX49_03859 Ribosome hibernation promoting factor low > 75
Pseudomonas lactucae CFBP13502 0.23 GEMAOFIL_01158 hypothetical protein 0.37 GEMAOFIL_01074 Ribosome hibernation promoting factor — —
Erwinia tracheiphila SCR3 0.23 LU632_RS15270 SDR family oxidoreductase 0.29 LU632_RS21285 hpf ribosome hibernation promoting factor low > 74
Erwinia tracheiphila HP pepo 2.2 0.22 IJEDHG_01045 SDR family oxidoreductase 0.29 IJEDHG_13735 hpf ribosome hibernation promoting factor low > 61
Pseudomonas fluorescens FW300-N1B4 0.22 Pf1N1B4_996 Oxidoreductase, short chain dehydrogenase/reductase family 0.41 Pf1N1B4_1081 Ribosome hibernation protein YhbH low > 87
Kangiella aquimarina DSM 16071 0.22 B158DRAFT_0911 Short-chain dehydrogenases of various substrate specificities 0.38 B158DRAFT_2079 ribosomal subunit interface protein low > 40
Enterobacter asburiae PDN3 0.22 EX28DRAFT_2466 Short-chain dehydrogenases of various substrate specificities 0.35 EX28DRAFT_3257 ribosomal subunit interface protein — —
Pseudomonas fluorescens GW456-L13 0.22 PfGW456L13_1672 Oxidoreductase, short chain dehydrogenase/reductase family 0.41 PfGW456L13_5015 Ribosome hibernation protein YhbH low > 87
Klebsiella pneumoniae MKP103 0.21 KDGMDA_14980 SDR family oxidoreductase 0.35 KDGMDA_06085 ribosome hibernation promoting factor low > 95
Erwinia amylovora T8 0.21 OLJFJH_17680 SDR family oxidoreductase 0.29 OLJFJH_07065 ribosome hibernation promoting factor low > 58
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.21 GFF4411 Putative NAD(P)-dependent oxidoreductase EC-YbbO 0.35 GFF2947 Ribosome hibernation protein YhbH low > 78
Shewanella sp. ANA-3 0.20 Shewana3_3687 short-chain dehydrogenase/reductase SDR (RefSeq) 0.39 Shewana3_0671 sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq) low > 73
Escherichia coli Nissle 1917 0.20 ECOLIN_RS02915 NADP(+)-dependent aldehyde reductase 0.35 ECOLIN_RS18430 ribosome hibernation promoting factor low > 55
Escherichia coli ECRC100 0.20 OKFHMN_07980 ybbO NADP(+)-dependent aldehyde reductase 0.35 OKFHMN_17935 Ribosome hibernation promoting factor low > 79
Escherichia coli ECRC99 0.20 KEDOAH_19990 ybbO NADP(+)-dependent aldehyde reductase 0.35 KEDOAH_10215 Ribosome hibernation promoting factor — —
Escherichia coli BW25113 0.20 b0493 ybbO short chain dehydrogenase (NCBI) 0.35 b3203 yhbH predicted ribosome-associated, sigma 54 modulation protein (NCBI) low > 76
Escherichia coli ECRC98 0.20 JDDGAC_11625 ybbO NADP(+)-dependent aldehyde reductase 0.35 JDDGAC_21560 Ribosome hibernation promoting factor 0.61 12
Escherichia coli ECRC102 0.20 NIAGMN_06030 ybbO NADP(+)-dependent aldehyde reductase 0.35 NIAGMN_15695 Ribosome hibernation promoting factor low > 80
Escherichia fergusonii Becca 0.20 EFB2_03562 hypothetical protein 0.35 EFB2_00620 Ribosome hibernation promoting factor low > 86
Escherichia coli ECRC101 0.20 MCAODC_27195 ybbO NADP(+)-dependent aldehyde reductase 0.35 MCAODC_08455 Ribosome hibernation promoting factor low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.20 OHPLBJKB_03181 hypothetical protein 0.35 OHPLBJKB_00497 Ribosome hibernation promoting factor low > 74
Escherichia coli ECOR27 0.20 NOLOHH_00970 ybbO NADP(+)-dependent aldehyde reductase 0.35 NOLOHH_09735 Ribosome hibernation promoting factor low > 76
Escherichia coli BL21 0.20 ECD_00444 putative oxidoreductase 0.35 ECD_03068 ribosome hibernation promoting factor HPF; stabilizes 100S dimers low > 61
Escherichia coli ECRC62 0.20 BNILDI_22390 ybbO NADP(+)-dependent aldehyde reductase 0.35 BNILDI_01800 Ribosome hibernation promoting factor low > 75

Not shown: 12 genomes with orthologs for Xcc-8004.558.1 only; 36 genomes with orthologs for Xcc-8004.1661.1 only