| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Rhodopseudomonas palustris CGA009 | 1.0 | TX73_019540 | | FAD-dependent oxidoreductase | 1.0 | TX73_012035 | | ABC transporter substrate-binding protein | 0.58 | 8 |
| Rhizobium sp. OAE497 | 0.54 | ABIE40_RS03380 | | FAD-binding oxidoreductase | 0.16 | ABIE40_RS24180 | | ABC transporter substrate-binding protein | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.53 | SMc00797 | | oxidoreductase | 0.31 | SMa2075 | | ABC transporter substrate-binding protein | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.52 | ABIE53_004136 | | D-amino-acid dehydrogenase | 0.34 | ABIE53_006408 | | peptide/nickel transport system substrate-binding protein | low | > 113 |
| Pseudomonas putida KT2440 | 0.52 | PP_3596 | | D-lysine oxidase | 0.13 | PP_0885 | | dipeptide ABC transporter - periplasmic binding protein | low | > 96 |
| Bosea sp. OAE506 | 0.51 | ABIE41_RS13575 | | FAD-binding oxidoreductase | 0.47 | ABIE41_RS02550 | | ABC transporter substrate-binding protein | low | > 77 |
| Ralstonia sp. UNC404CL21Col | 0.51 | ABZR87_RS23145 | | FAD-binding oxidoreductase | 0.13 | ABZR87_RS14620 | | ABC transporter substrate-binding protein | 0.24 | 55 |
| Shewanella loihica PV-4 | 0.24 | Shew_2360 | | D-hydroxyproline dehydrogenase (from data) | 0.13 | Shew_2498 | | extracellular solute-binding protein (RefSeq) | low | > 60 |
| Pseudomonas fluorescens SBW25 | 0.21 | PFLU_RS16215 | | FAD-binding oxidoreductase | 0.33 | PFLU_RS10915 | | ABC transporter substrate-binding protein | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.21 | PFLU_RS16215 | | FAD-binding oxidoreductase | 0.33 | PFLU_RS10915 | | ABC transporter substrate-binding protein | low | > 109 |
| Agrobacterium fabrum C58 | 0.20 | Atu3364 | | D-amino acid dehydrogenase | 0.35 | Atu3433 | | oligopeptide ABC transporter substrate-binding protein | low | > 89 |
| Pseudomonas simiae WCS417 | 0.19 | PS417_14320 | | FAD-dependent oxidoreductase | 0.14 | PS417_27765 | | peptide ABC transporter substrate-binding protein | low | > 88 |
| Azospirillum sp. SherDot2 | 0.18 | MPMX19_04536 | | D-amino acid dehydrogenase 1 | 0.57 | MPMX19_02825 | | Oligopeptide-binding protein AppA | low | > 112 |
| Cupriavidus basilensis FW507-4G11 | 0.18 | RR42_RS09075 | | amino acid dehydrogenase | 0.47 | RR42_RS27430 | | peptide ABC transporter substrate-binding protein | low | > 128 |
| Vibrio cholerae E7946 ATCC 55056 | 0.17 | CSW01_04065 | | D-amino acid dehydrogenase small subunit | 0.11 | CSW01_08445 | | ABC transporter substrate-binding protein | low | > 62 |
| Pseudomonas fluorescens FW300-N2E2 | 0.16 | Pf6N2E2_4391 | | D-amino acid dehydrogenase small subunit (EC 1.4.99.1) | 0.15 | Pf6N2E2_3427 | | Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2); Putative hemin-binding lipoprotein | low | > 103 |
| Variovorax sp. OAS795 | 0.16 | ABID97_RS22385 | | D-amino acid dehydrogenase | 0.15 | ABID97_RS11660 | | ABC transporter substrate-binding protein | low | > 91 |
| Pseudomonas fluorescens FW300-N2C3 | 0.16 | AO356_12620 | | amino acid dehydrogenase | 0.14 | AO356_07725 | | diguanylate cyclase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E3 | 0.16 | AO353_09155 | | amino acid dehydrogenase | 0.15 | AO353_21850 | | diguanylate cyclase | low | > 101 |
| Variovorax sp. SCN45 | 0.16 | GFF1773 | | D-amino acid dehydrogenase (EC 1.4.99.6) | 0.32 | GFF4128 | | ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) | low | > 127 |
| Pseudomonas fluorescens FW300-N1B4 | 0.16 | Pf1N1B4_2144 | | D-amino acid dehydrogenase small subunit (EC 1.4.99.1) | 0.15 | Pf1N1B4_5106 | | Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2); Putative hemin-binding lipoprotein | low | > 87 |
| Pectobacterium carotovorum WPP14 | 0.15 | HER17_RS11170 | | D-amino acid dehydrogenase | 0.34 | HER17_RS16445 | | ABC transporter substrate-binding protein | low | > 75 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.15 | Psyr_0235 | | D-amino acid dehydrogenase small subunit | 0.15 | Psyr_4211 | | extracellular solute-binding protein, family 5 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.15 | Psyr_0235 | | D-amino acid dehydrogenase small subunit | 0.15 | Psyr_4211 | | extracellular solute-binding protein, family 5 | low | > 86 |
| Rahnella sp. WP5 | 0.14 | EX31_RS10485 | | D-amino acid dehydrogenase | 0.17 | EX31_RS02025 | | ABC transporter substrate-binding protein | low | > 89 |
| Azospirillum brasilense Sp245 | 0.14 | AZOBR_RS08020 | | D-alanine dehydrogenase (EC 1.4.99.-) (from data) | 0.61 | AZOBR_RS23015 | | peptide ABC transporter substrate-binding protein | low | > 97 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.14 | CA265_RS05715 | | amino acid dehydrogenase | 0.12 | CA265_RS01030 | | ABC transporter substrate-binding protein | low | > 88 |
| Dickeya dianthicola 67-19 | 0.14 | HGI48_RS11195 | | D-amino acid dehydrogenase | 0.33 | HGI48_RS11825 | | ABC transporter substrate-binding protein | low | > 71 |
| Dickeya dadantii 3937 | 0.14 | DDA3937_RS11170 | | D-amino acid dehydrogenase | 0.16 | DDA3937_RS06935 | | ABC transporter substrate-binding protein | low | > 74 |
| Dickeya dianthicola ME23 | 0.14 | DZA65_RS11540 | | D-amino acid dehydrogenase | 0.33 | DZA65_RS12365 | | ABC transporter substrate-binding protein | low | > 75 |
| Klebsiella michiganensis M5al | 0.14 | BWI76_RS17735 | | D-amino acid dehydrogenase small subunit | 0.16 | BWI76_RS19180 | | diguanylate cyclase | low | > 92 |
| Escherichia coli ECRC99 | 0.13 | KEDOAH_25305 | dadA | D-amino acid dehydrogenase | 0.16 | KEDOAH_27125 | ddpA | putative D,D-dipeptide-binding periplasmic protein DdpA | — | — |
| Escherichia coli ECRC98 | 0.13 | JDDGAC_06220 | dadA | D-amino acid dehydrogenase | 0.16 | JDDGAC_03810 | ddpA | putative D,D-dipeptide-binding periplasmic protein DdpA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.13 | OHPLBJKB_02500 | | D-amino acid dehydrogenase | 0.16 | OHPLBJKB_02230 | | putative D,D-dipeptide-binding periplasmic protein DdpA | low | > 73 |
| Escherichia coli ECRC62 | 0.13 | BNILDI_18890 | dadA | D-amino acid dehydrogenase | 0.16 | BNILDI_17445 | ddpA | putative D,D-dipeptide-binding periplasmic protein DdpA | low | > 75 |
| Escherichia coli ECRC100 | 0.13 | OKFHMN_28290 | dadA | D-amino acid dehydrogenase | 0.16 | OKFHMN_01320 | ddpA | putative D,D-dipeptide-binding periplasmic protein DdpA | — | — |
| Escherichia coli ECOR27 | 0.13 | NOLOHH_20725 | dadA | D-amino acid dehydrogenase | 0.15 | NOLOHH_18960 | ddpA | putative D,D-dipeptide-binding periplasmic protein DdpA | low | > 75 |
| Escherichia coli BW25113 | 0.13 | b1189 | dadA | D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data) | 0.16 | b1487 | ddpA | D-ala-D-a la transporter subunit (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.13 | ECD_01164 | | D-amino acid dehydrogenase | 0.16 | ECD_01445 | | D,D-dipeptide ABC transporter periplasmic binding protein | low | > 61 |
| Escherichia coli ECRC102 | 0.13 | NIAGMN_27930 | dadA | D-amino acid dehydrogenase | 0.16 | NIAGMN_25450 | ddpA | putative D,D-dipeptide-binding periplasmic protein DdpA | — | — |
| Escherichia coli ECRC101 | 0.13 | MCAODC_21880 | dadA | D-amino acid dehydrogenase | 0.16 | MCAODC_16620 | ddpA | putative D,D-dipeptide-binding periplasmic protein DdpA | low | > 87 |
| Escherichia coli ECOR38 | 0.13 | HEPCGN_24750 | dadA | D-amino acid dehydrogenase | 0.16 | HEPCGN_26475 | ddpA | putative D,D-dipeptide-binding periplasmic protein DdpA | low | > 87 |
| Enterobacter sp. TBS_079 | 0.13 | MPMX20_02699 | | D-amino acid dehydrogenase | 0.15 | MPMX20_02356 | | putative D,D-dipeptide-binding periplasmic protein DdpA | low | > 85 |
| Serratia liquefaciens MT49 | 0.12 | IAI46_14460 | | D-amino acid dehydrogenase | 0.15 | IAI46_12025 | | ABC transporter substrate-binding protein | low | > 86 |
Not shown: 37 genomes with orthologs for TX73_019540 only; 6 genomes with orthologs for TX73_012035 only