Conservation of cofitness between RR42_RS32990 and RR42_RS02575 in Cupriavidus basilensis FW507-4G11

45 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS32990 1-aminocyclopropane-1-carboxylate deaminase 1.0 RR42_RS02575 ABC transporter 0.78 1
Paraburkholderia sabiae LMG 24235 0.89 QEN71_RS09955 1-aminocyclopropane-1-carboxylate deaminase 0.65 QEN71_RS26885 glutamate/aspartate ABC transporter substrate-binding protein low > 153
Variovorax sp. SCN45 0.88 GFF5505 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7) 0.53 GFF4088 Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4) — —
Ralstonia solanacearum PSI07 0.87 RPSI07_RS02310 1-aminocyclopropane-1-carboxylate deaminase 0.85 RPSI07_RS21655 amino acid ABC transporter substrate-binding protein low > 81
Ralstonia sp. UNC404CL21Col 0.87 ABZR87_RS13980 1-aminocyclopropane-1-carboxylate deaminase 0.80 ABZR87_RS07520 glutamate/aspartate ABC transporter substrate-binding protein low > 80
Paraburkholderia graminis OAS925 0.87 ABIE53_005908 1-aminocyclopropane-1-carboxylate deaminase 0.65 ABIE53_003510 glutamate/aspartate transport system substrate-binding protein low > 113
Burkholderia phytofirmans PsJN 0.87 BPHYT_RS26815 1-aminocyclopropane-1-carboxylate deaminase 0.66 BPHYT_RS16700 ABC transporter low > 109
Paraburkholderia bryophila 376MFSha3.1 0.87 H281DRAFT_02886 1-aminocyclopropane-1-carboxylate deaminase 0.65 H281DRAFT_04270 L-glutamate-binding protein /L-aspartate-binding protein low > 103
Ralstonia solanacearum UW163 0.86 UW163_RS18745 1-aminocyclopropane-1-carboxylate deaminase 0.84 UW163_RS02030 amino acid ABC transporter substrate-binding protein — —
Ralstonia solanacearum GMI1000 0.86 RS_RS20210 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein 0.85 RS_RS02385 amino acid ABC transporter substrate-binding protein low > 80
Ralstonia solanacearum IBSBF1503 0.86 RALBFv3_RS20430 1-aminocyclopropane-1-carboxylate deaminase 0.84 RALBFv3_RS11555 amino acid ABC transporter substrate-binding protein low > 76
Dickeya dadantii 3937 0.85 DDA3937_RS02260 1-aminocyclopropane-1-carboxylate deaminase 0.61 DDA3937_RS06225 glutamate/aspartate ABC transporter substrate-binding protein — —
Dickeya dianthicola 67-19 0.85 HGI48_RS02215 1-aminocyclopropane-1-carboxylate deaminase 0.61 HGI48_RS06270 glutamate/aspartate ABC transporter substrate-binding protein low > 71
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_1819 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7) 0.58 Pf6N2E2_5570 Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4) low > 103
Pseudomonas fluorescens FW300-N2C3 0.85 AO356_29420 1-aminocyclopropane-1-carboxylate deaminase 0.58 AO356_18230 ABC transporter low > 104
Dickeya dianthicola ME23 0.84 DZA65_RS02355 1-aminocyclopropane-1-carboxylate deaminase 0.61 DZA65_RS06615 glutamate/aspartate ABC transporter substrate-binding protein low > 75
Pseudomonas sp. RS175 0.84 PFR28_00042 1-aminocyclopropane-1-carboxylate deaminase 0.59 PFR28_03371 Glutamate/aspartate import solute-binding protein low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.83 Psyr_1801 1-aminocyclopropane-1-carboxylate deaminase 0.59 Psyr_3908 L-aspartate-binding protein / L-glutamate-binding protein low > 86
Pseudomonas syringae pv. syringae B728a 0.83 Psyr_1801 1-aminocyclopropane-1-carboxylate deaminase 0.59 Psyr_3908 L-aspartate-binding protein / L-glutamate-binding protein low > 86
Pseudomonas fluorescens FW300-N1B4 0.72 Pf1N1B4_2911 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7) 0.61 Pf1N1B4_771 ABC transporter for L-asparagine and L-glutamate, periplasmic substrate-binding component (from data) low > 87
Pectobacterium carotovorum WPP14 0.34 HER17_RS14100 D-cysteine desulfhydrase 0.62 HER17_RS15190 amino acid ABC transporter substrate-binding protein low > 75
Pseudomonas sp. S08-1 0.31 OH686_18910 D-cysteine desulfhydrase 0.60 OH686_13350 Glutamate/aspartate ABC transporter, substrate-binding protein GltI low > 80
Pseudomonas simiae WCS417 0.30 PS417_01110 cysteine desulfhydrase 0.57 PS417_05560 ABC transporter low > 88
Escherichia coli ECRC99 0.29 KEDOAH_02295 dcyD D-cysteine desulfhydrase 0.60 KEDOAH_20720 gltI glutamate/aspartate ABC transporter substrate-binding protein GltI — —
Escherichia coli ECRC102 0.29 NIAGMN_02255 dcyD D-cysteine desulfhydrase 0.60 NIAGMN_05305 gltI glutamate/aspartate ABC transporter substrate-binding protein GltI — —
Escherichia coli ECRC98 0.29 JDDGAC_00385 dcyD D-cysteine desulfhydrase 0.60 JDDGAC_10895 gltI glutamate/aspartate ABC transporter substrate-binding protein GltI low > 86
Escherichia coli ECRC101 0.29 MCAODC_19595 dcyD D-cysteine desulfhydrase 0.60 MCAODC_26465 gltI glutamate/aspartate ABC transporter substrate-binding protein GltI low > 87
Escherichia coli ECRC100 0.29 OKFHMN_25795 dcyD D-cysteine desulfhydrase 0.60 OKFHMN_07250 gltI glutamate/aspartate ABC transporter substrate-binding protein GltI low > 80
Escherichia coli BW25113 0.29 b1919 yedO putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS) 0.59 b0655 gltI glutamate and aspartate transporter subunit (NCBI) low > 76
Escherichia coli ECRC62 0.29 BNILDI_15205 dcyD D-cysteine desulfhydrase 0.60 BNILDI_21645 gltI glutamate/aspartate ABC transporter substrate-binding protein GltI low > 75
Escherichia coli ECOR38 0.29 HEPCGN_04150 dcyD D-cysteine desulfhydrase 0.60 HEPCGN_00980 gltI glutamate/aspartate ABC transporter substrate-binding protein GltI low > 87
Pseudomonas fluorescens SBW25 0.29 PFLU_RS01220 D-cysteine desulfhydrase 0.57 PFLU_RS05645 glutamate/aspartate ABC transporter substrate-binding protein low > 109
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_01810 D-cysteine desulfhydrase 0.60 OHPLBJKB_03058 Glutamate/aspartate import solute-binding protein low > 73
Pseudomonas fluorescens SBW25-INTG 0.29 PFLU_RS01220 D-cysteine desulfhydrase 0.57 PFLU_RS05645 glutamate/aspartate ABC transporter substrate-binding protein low > 109
Escherichia coli Nissle 1917 0.29 ECOLIN_RS10930 D-cysteine desulfhydrase 0.60 ECOLIN_RS03525 glutamate/aspartate ABC transporter substrate-binding protein GltI — —
Escherichia coli ECOR27 0.29 NOLOHH_16415 dcyD D-cysteine desulfhydrase 0.60 NOLOHH_23635 gltI glutamate/aspartate ABC transporter substrate-binding protein GltI low > 75
Pseudomonas fluorescens FW300-N2E3 0.29 AO353_11680 cysteine desulfhydrase 0.60 AO353_16290 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, periplasmic substrate-binding component (from data) low > 101
Klebsiella michiganensis M5al 0.29 BWI76_RS18360 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein 0.59 BWI76_RS08110 glutamate/aspartate ABC transporter substrate-binding protein low > 92
Pseudomonas fluorescens GW456-L13 0.29 PfGW456L13_443 D-cysteine desulfhydrase (EC 4.4.1.15) 0.57 PfGW456L13_4770 ABC transporter for L-Asparagine and possibly other L-amino acids, periplasmic substrate-binding component (from data) low > 87
Rahnella sp. WP5 0.28 EX31_RS09440 D-cysteine desulfhydrase 0.62 EX31_RS23175 amino acid ABC transporter substrate-binding protein low > 89
Enterobacter asburiae PDN3 0.28 EX28DRAFT_0628 D-cysteine desulfhydrase (EC 4.4.1.15) 0.62 EX28DRAFT_2315 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain low > 76
Pantoea sp. MT58 0.28 IAI47_08170 D-cysteine desulfhydrase 0.62 IAI47_13970 amino acid ABC transporter substrate-binding protein low > 76
Serratia liquefaciens MT49 0.28 IAI46_15775 D-cysteine desulfhydrase 0.62 IAI46_05995 amino acid ABC transporter substrate-binding protein low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.28 GFF1693 D-cysteine desulfhydrase (EC 4.4.1.15) 0.61 GFF4573 Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4) low > 78
Enterobacter sp. TBS_079 0.28 MPMX20_02844 D-cysteine desulfhydrase 0.61 MPMX20_01306 Glutamate/aspartate import solute-binding protein low > 85
Acinetobacter radioresistens SK82 0.08 MPMX26_02533 D-cysteine desulfhydrase 0.52 MPMX26_00678 Glutamate/aspartate import solute-binding protein — —

Not shown: 16 genomes with orthologs for RR42_RS32990 only; 7 genomes with orthologs for RR42_RS02575 only