| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_0315 | | Protein of unknown function DUF589 | 1.0 | Psyr_4958 | | AAA ATPase, central region:Clp, N terminal:Clp, N terminal | 0.35 | 18 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_0315 | | Protein of unknown function DUF589 | 1.00 | Psyr_4958 | | AAA ATPase, central region:Clp, N terminal:Clp, N terminal | low | > 86 |
| Pseudomonas sp. SVBP6 | 0.84 | COO64_RS01020 | | EVE domain-containing protein | 0.48 | COO64_RS00480 | tssH | type VI secretion system ATPase TssH | low | > 93 |
| Pseudomonas lactucae CFBP13502 | 0.82 | GEMAOFIL_05601 | | hypothetical protein | 0.50 | GEMAOFIL_00064 | | Protein ClpV1 | low | > 93 |
| Pseudomonas fluorescens SBW25-INTG | 0.80 | PFLU_RS28970 | | EVE domain-containing protein | 0.50 | PFLU_RS29660 | | type VI secretion system ATPase TssH | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.80 | Pf1N1B4_2223 | | FIG006231: RNA-binding protein | 0.50 | Pf1N1B4_2056 | | ClpB protein | low | > 87 |
| Pseudomonas fluorescens SBW25 | 0.80 | PFLU_RS28970 | | EVE domain-containing protein | 0.50 | PFLU_RS29660 | | type VI secretion system ATPase TssH | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.79 | Pf6N2E2_4474 | | FIG006231: RNA-binding protein | 0.50 | Pf6N2E2_4327 | | ClpB protein | low | > 103 |
| Pseudomonas sp. DMC3 | 0.79 | GFF322 | | hypothetical protein | 0.40 | GFF452 | | Protein ClpV1 | low | > 89 |
| Pseudomonas putida KT2440 | 0.79 | PP_5205 | | conserved protein of unknown function | 0.81 | PP_3095 | | Protein ClpV1 | low | > 96 |
| Pseudomonas simiae WCS417 | 0.79 | PS417_27315 | | hypothetical protein | 0.51 | PS417_27980 | | ATPase AAA | low | > 88 |
| Pseudomonas sp. BP01 | 0.79 | JOY50_RS22480 | | EVE domain-containing protein | 0.82 | JOY50_RS19890 | tssH | type VI secretion system ATPase TssH | low | > 84 |
| Pseudomonas fluorescens FW300-N2C3 | 0.78 | AO356_12985 | | hypothetical protein | 0.50 | AO356_12245 | | ClpV1 family T6SS ATPase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E3 | 0.76 | AO353_08785 | | hypothetical protein | 0.50 | AO353_09620 | | ClpV1 family T6SS ATPase | low | > 101 |
| Pseudomonas stutzeri RCH2 | 0.76 | Psest_0168 | | Uncharacterized conserved protein | 0.41 | Psest_0125 | | type VI secretion ATPase, ClpV1 family | low | > 67 |
| Pseudomonas sp. S08-1 | 0.75 | OH686_11235 | | Protein of unknown function DUF55 | 0.40 | OH686_12815 | | type VI secretion ATPase, ClpV1 family | low | > 80 |
| Pseudomonas sp. RS175 | 0.75 | PFR28_04327 | | hypothetical protein | 0.48 | PFR28_04464 | | Protein ClpV1 | low | > 88 |
| Pseudomonas segetis P6 | 0.73 | MPMX49_04494 | | hypothetical protein | 0.40 | MPMX49_00137 | | Protein ClpV1 | low | > 75 |
| Pseudomonas aeruginosa PA14 | 0.72 | IKLFDK_27315 | | EVE domain-containing protein | 0.50 | IKLFDK_25100 | | type VI secretion system AAA+ family ATPase | low | > 100 |
| Marinobacter adhaerens HP15 | 0.55 | HP15_2975 | | protein belonging to uncharacterized protein family UPF0310 | 0.42 | HP15_3467 | | type VI secretion ATPase, ClpV1 family | low | > 73 |
| Ralstonia sp. UNC404CL21Col | 0.48 | ABZR87_RS00115 | | EVE domain-containing protein | 0.56 | ABZR87_RS20210 | | type VI secretion system ATPase TssH | low | > 80 |
| Paraburkholderia sabiae LMG 24235 | 0.48 | QEN71_RS25165 | | EVE domain-containing protein | 0.57 | QEN71_RS31725 | | type VI secretion system ATPase TssH | low | > 153 |
| Ralstonia solanacearum PSI07 | 0.48 | RPSI07_RS12860 | | EVE domain-containing protein | 0.55 | RPSI07_RS02950 | | type VI secretion system ATPase TssH | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.47 | RS_RS12065 | | EVE domain-containing protein | 0.55 | RS_RS20700 | | type VI secretion system ATPase TssH | low | > 80 |
| Ralstonia solanacearum UW163 | 0.46 | UW163_RS09155 | | EVE domain-containing protein | 0.55 | UW163_RS19150 | | type VI secretion system ATPase TssH | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.46 | RALBFv3_RS04515 | | EVE domain-containing protein | 0.55 | RALBFv3_RS20025 | | type VI secretion system ATPase TssH | low | > 76 |
| Burkholderia phytofirmans PsJN | 0.46 | BPHYT_RS04835 | | hypothetical protein | 0.55 | BPHYT_RS24425 | | ATPase | low | > 109 |
| Cupriavidus basilensis FW507-4G11 | 0.46 | RR42_RS16155 | | RNA-binding protein | 0.45 | RR42_RS03510 | | ATPase AAA | low | > 128 |
| Paraburkholderia graminis OAS925 | 0.46 | ABIE53_001243 | | putative RNA-binding protein with PUA-like domain | 0.55 | ABIE53_006453 | | type VI secretion system protein VasG | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.46 | H281DRAFT_00131 | | Predicted RNA-binding protein, contains PUA-like domain | 0.55 | H281DRAFT_05369 | | type VI secretion system protein VasG | low | > 103 |
| Variovorax sp. SCN45 | 0.44 | GFF3613 | | Protein of unknown function DUF55 | 0.52 | GFF3017 | | T6SS AAA+ chaperone ClpV (TssH) | low | > 127 |
| Variovorax sp. OAS795 | 0.42 | ABID97_RS00760 | | EVE domain-containing protein | 0.48 | ABID97_RS05065 | | type VI secretion system ATPase TssH | low | > 91 |
| Azospirillum sp. SherDot2 | 0.32 | MPMX19_02040 | | hypothetical protein | 0.44 | MPMX19_03417 | | Protein ClpV1 | low | > 112 |
| Azospirillum brasilense Sp245 | 0.29 | AZOBR_RS00280 | | ubiquinol-cytochrome C reductase | 0.44 | AZOBR_RS21220 | | ATPase | low | > 97 |
| Agrobacterium fabrum C58 | 0.26 | Atu2648 | | hypothetical protein | 0.37 | Atu4344 | | ATP-dependent Clp protease, ATP-binding subunit | low | > 89 |
| Bosea sp. OAE506 | 0.22 | ABIE41_RS05665 | | EVE domain-containing protein | 0.46 | ABIE41_RS14395 | | type VI secretion system ATPase TssH | low | > 77 |
Not shown: 34 genomes with orthologs for Psyr_0315 only; 27 genomes with orthologs for Psyr_4958 only