| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_3208 | | NADH dehydrogenase subunit M | 1.0 | Psyr_3876 | | amino acid ABC transporter membrane protein 2, PAAT family | 0.36 | 20 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_3208 | | NADH dehydrogenase subunit M | 1.00 | Psyr_3876 | | amino acid ABC transporter membrane protein 2, PAAT family | — | — |
| Pseudomonas sp. DMC3 | 0.88 | GFF1501 | | NADH-quinone oxidoreductase subunit M | 0.91 | GFF2145 | | Histidine transport system permease protein HisM | low | > 89 |
| Pseudomonas fluorescens FW300-N2C3 | 0.88 | AO356_22015 | | NADH:ubiquinone oxidoreductase subunit M | 0.91 | AO356_05505 | | ABC transporter for L-Lysine, permease component 2 (from data) | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.88 | Pf6N2E2_266 | | NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) | 0.90 | Pf6N2E2_2960 | | ABC transporter for L-Lysine, permease component 2 (from data) | — | — |
| Pseudomonas sp. RS175 | 0.87 | PFR28_02638 | | NADH-quinone oxidoreductase subunit M | 0.90 | PFR28_00505 | | Histidine transport system permease protein HisM | — | — |
| Pseudomonas lactucae CFBP13502 | 0.87 | GEMAOFIL_03653 | | NADH-quinone oxidoreductase subunit M | 0.92 | GEMAOFIL_01451 | | Histidine transport system permease protein HisM | low | > 96 |
| Pseudomonas simiae WCS417 | 0.86 | PS417_16630 | | NADH:ubiquinone oxidoreductase subunit M | 0.92 | PS417_06405 | | amino acid ABC transporter permease | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.86 | PfGW456L13_2622 | | NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) | 0.91 | PfGW456L13_4637 | | Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.86 | PFLU_RS18670 | | NADH-quinone oxidoreductase subunit M | 0.91 | PFLU_RS06470 | | ABC transporter permease | low | > 109 |
| Pseudomonas orientalis W4I3 | 0.86 | QF045_RS18395 | | NADH-quinone oxidoreductase subunit M | 0.92 | QF045_RS09250 | | ABC transporter permease | low | > 93 |
| Pseudomonas fluorescens SBW25 | 0.86 | PFLU_RS18670 | | NADH-quinone oxidoreductase subunit M | 0.91 | PFLU_RS06470 | | ABC transporter permease | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.86 | AO353_27795 | | NADH:ubiquinone oxidoreductase subunit M | 0.91 | AO353_16960 | | amino acid ABC transporter permease | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.85 | Pf1N1B4_4029 | | NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) | 0.90 | Pf1N1B4_3177 | | Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) | low | > 87 |
| Pseudomonas sp. SVBP6 | 0.81 | COO64_RS24325 | nuoM | NADH-quinone oxidoreductase subunit M | 0.89 | COO64_RS16950 | | ABC transporter permease | low | > 93 |
| Pseudomonas aeruginosa MRSN321 | 0.80 | DY961_RS03975 | nuoM;go_function=NADH | NADH-quinone oxidoreductase subunit M | 0.65 | DY961_RS02365 | | ABC transporter permease | low | > 100 |
| Pseudomonas aeruginosa PA14 | 0.80 | IKLFDK_13295 | | NADH-quinone oxidoreductase subunit M | 0.65 | IKLFDK_14860 | | amino acid ABC transporter permease | low | > 98 |
| Pseudomonas aeruginosa PUPa3 | 0.80 | DQ20_RS35005 | nuoM;go_function=NADH | NADH-quinone oxidoreductase subunit M | 0.65 | DQ20_RS33225 | | ABC transporter permease | low | > 101 |
| Serratia liquefaciens MT49 | 0.73 | IAI46_17655 | | NADH-quinone oxidoreductase subunit M | 0.63 | IAI46_17790 | | ABC transporter permease | low | > 87 |
| Rahnella sp. WP5 | 0.72 | EX31_RS19380 | | NADH-quinone oxidoreductase subunit M | 0.65 | EX31_RS19550 | | ABC transporter permease | low | > 89 |
| Klebsiella pneumoniae MKP103 | 0.72 | KDGMDA_27015 | | NADH-quinone oxidoreductase subunit M | 0.63 | KDGMDA_27160 | | histidine ABC transporter permease HisM | low | > 95 |
| Erwinia amylovora T8 | 0.72 | OLJFJH_11465 | | NADH-quinone oxidoreductase subunit M | 0.64 | OLJFJH_11300 | | amino acid ABC transporter permease | low | > 58 |
| Klebsiella michiganensis M5al | 0.72 | BWI76_RS20135 | | NADH-quinone oxidoreductase subunit M | 0.62 | BWI76_RS20325 | | histidine/lysine/arginine/ornithine ABC transporter permease HisM | low | > 92 |
| Pectobacterium carotovorum WPP14 | 0.72 | HER17_RS07180 | | NADH-quinone oxidoreductase subunit M | 0.63 | HER17_RS07040 | | ABC transporter permease | low | > 75 |
| Escherichia coli BW25113 | 0.71 | b2277 | nuoM | NADH dehydrogenase subunit M (NCBI) | 0.64 | b2307 | hisM | histidine/lysine/arginine/ornithine transporter subunit (NCBI) | low | > 76 |
| Escherichia coli Nissle 1917 | 0.71 | ECOLIN_RS13230 | | NADH-quinone oxidoreductase subunit M | 0.64 | ECOLIN_RS13380 | | ABC transporter permease | low | > 55 |
| Escherichia coli ECOR27 | 0.71 | NOLOHH_14515 | nuoM | NADH-quinone oxidoreductase subunit M | 0.63 | NOLOHH_14360 | hisM | Histidine transport system permease protein HisM | low | > 76 |
| Escherichia coli ECOR38 | 0.71 | HEPCGN_22100 | nuoM | NADH-quinone oxidoreductase subunit M | 0.63 | HEPCGN_21935 | hisM | Histidine transport system permease protein HisM | low | > 88 |
| Escherichia coli ECRC100 | 0.71 | OKFHMN_22895 | nuoM | NADH-quinone oxidoreductase subunit M | 0.63 | OKFHMN_22740 | hisM | Histidine transport system permease protein HisM | low | > 79 |
| Escherichia coli ECRC102 | 0.71 | NIAGMN_20665 | nuoM | NADH-quinone oxidoreductase subunit M | 0.63 | NIAGMN_20510 | hisM | Histidine transport system permease protein HisM | low | > 80 |
| Escherichia coli ECRC99 | 0.71 | KEDOAH_05300 | nuoM | NADH-quinone oxidoreductase subunit M | 0.63 | KEDOAH_05455 | hisM | Histidine transport system permease protein HisM | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.71 | OHPLBJKB_01429 | | NADH-quinone oxidoreductase subunit M | 0.63 | OHPLBJKB_01398 | | Histidine transport system permease protein HisM | low | > 74 |
| Escherichia fergusonii Becca | 0.71 | EFB2_01582 | | NADH-quinone oxidoreductase subunit M | 0.64 | EFB2_01551 | | Histidine transport system permease protein HisM | low | > 86 |
| Escherichia coli ECRC62 | 0.71 | BNILDI_13435 | nuoM | NADH-quinone oxidoreductase subunit M | 0.63 | BNILDI_13280 | hisM | Histidine transport system permease protein HisM | low | > 75 |
| Escherichia coli ECRC101 | 0.71 | MCAODC_13935 | nuoM | NADH-quinone oxidoreductase subunit M | 0.63 | MCAODC_13780 | hisM | Histidine transport system permease protein HisM | low | > 87 |
| Escherichia coli BL21 | 0.71 | ECD_02202 | | NADH:ubiquinone oxidoreductase, membrane subunit M | 0.64 | ECD_02232 | | histidine ABC transporter permease | low | > 61 |
| Escherichia coli ECRC98 | 0.71 | JDDGAC_26860 | nuoM | NADH-quinone oxidoreductase subunit M | 0.63 | JDDGAC_26700 | hisM | Histidine transport system permease protein HisM | low | > 87 |
| Pantoea sp. MT58 | 0.71 | IAI47_06415 | | NADH-quinone oxidoreductase subunit M | 0.66 | IAI47_06295 | | ABC transporter permease | low | > 76 |
| Pantoea agglomerans CFBP13505 P0401 | 0.71 | PagCFBP13505_RS00390 | | NADH-quinone oxidoreductase subunit M | 0.66 | PagCFBP13505_RS00250 | | ABC transporter permease subunit | low | > 74 |
| Enterobacter asburiae PDN3 | 0.71 | EX28DRAFT_0333 | | proton-translocating NADH-quinone oxidoreductase, chain M | 0.63 | EX28DRAFT_0297 | | amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family | low | > 76 |
| Enterobacter sp. TBS_079 | 0.71 | MPMX20_03207 | | NADH-quinone oxidoreductase subunit M | 0.63 | MPMX20_03242 | | Histidine transport system permease protein HisM | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.71 | GFF1880 | | NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) | 0.63 | GFF1916 | | Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) | low | > 78 |
| Dickeya dadantii 3937 | 0.70 | DDA3937_RS14280 | | NADH-quinone oxidoreductase subunit M | 0.62 | DDA3937_RS14415 | | ABC transporter permease | — | — |
| Dickeya dianthicola ME23 | 0.70 | DZA65_RS14930 | | NADH-quinone oxidoreductase subunit M | 0.61 | DZA65_RS15315 | | ABC transporter permease | — | — |
| Dickeya dianthicola 67-19 | 0.70 | HGI48_RS14255 | | NADH-quinone oxidoreductase subunit M | 0.61 | HGI48_RS14385 | | ABC transporter permease | low | > 71 |
| Acinetobacter baumannii LAC-4 | 0.58 | RR41_RS15455 | | NADH-quinone oxidoreductase subunit M | 0.69 | RR41_RS06090 | | ABC transporter permease | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.32 | QEN71_RS24090 | | NADH-quinone oxidoreductase subunit M | 0.70 | QEN71_RS24875 | | ABC transporter permease | low | > 153 |
| Paraburkholderia graminis OAS925 | 0.31 | ABIE53_001602 | | NADH-quinone oxidoreductase subunit M | 0.68 | ABIE53_001766 | | histidine transport system permease protein | — | — |
| Burkholderia phytofirmans PsJN | 0.31 | BPHYT_RS06685 | | NADH:ubiquinone oxidoreductase subunit M | 0.70 | BPHYT_RS05500 | | histidine/lysine/arginine/ornithine ABC transporter permease HisM | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.31 | H281DRAFT_04579 | | NADH dehydrogenase subunit M | 0.71 | H281DRAFT_00222 | | amino acid ABC transporter membrane protein 2, PAAT family | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.31 | RR42_RS05570 | | NADH:ubiquinone oxidoreductase subunit M | 0.63 | RR42_RS29655 | | amino acid ABC transporter permease | — | — |
| Dinoroseobacter shibae DFL-12 | 0.31 | Dshi_1328 | | proton-translocating NADH-quinone oxidoreductase, chain M (RefSeq) | 0.25 | Dshi_2224 | | polar amino acid ABC transporter, inner membrane subunit (RefSeq) | — | — |
| Castellaniella sp019104865 MT123 | 0.31 | ABCV34_RS08690 | | NADH-quinone oxidoreductase subunit M | 0.60 | ABCV34_RS02175 | | histidine ABC transporter permease HisM | — | — |
Not shown: 55 genomes with orthologs for Psyr_3208 only; 0 genomes with orthologs for Psyr_3876 only