| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_4763 | | Peptidase C56, PfpI | 1.0 | Psyr_3716 | | Response regulator receiver:Transcriptional regulatory protein, C-terminal | 0.36 | 3 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_4763 | | Peptidase C56, PfpI | 1.00 | Psyr_3716 | | Response regulator receiver:Transcriptional regulatory protein, C-terminal | 0.44 | 46 |
| Pseudomonas fluorescens FW300-N2E2 | 0.82 | Pf6N2E2_4567 | | ThiJ/PfpI family protein | 0.77 | Pf6N2E2_5699 | | Transcriptional regulatory protein RstA | low | > 103 |
| Pseudomonas sp. DMC3 | 0.78 | GFF241 | | Putative cysteine protease YraA | 0.79 | GFF4845 | | Transcriptional regulatory protein OmpR | low | > 89 |
| Pseudomonas putida KT2440 | 0.72 | PP_2725 | | Protease PfpI | 0.67 | PP_1181 | | DNA-binding response regulator | low | > 96 |
| Pseudomonas stutzeri RCH2 | 0.72 | Psest_0237 | | intracellular protease, PfpI family | 0.67 | Psest_2730 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | low | > 67 |
| Pseudomonas sp. BP01 | 0.70 | JOY50_RS03115 | | type 1 glutamine amidotransferase domain-containing protein | 0.67 | JOY50_RS02000 | | response regulator transcription factor | low | > 84 |
| Pseudomonas sp. S08-1 | 0.70 | OH686_14115 | | Intracellular protease | 0.75 | OH686_20345 | | Two-component transcriptional response regulator, OmpR family | low | > 80 |
| Pseudomonas aeruginosa PA14 | 0.68 | IKLFDK_23660 | | protease PfpI | 0.70 | IKLFDK_05355 | | DNA-binding response regulator | low | > 98 |
| Pseudomonas aeruginosa MRSN321 | 0.67 | DY961_RS21745 | pfpI;inference=COORDINATES | protease PfpI | 0.70 | DY961_RS06635 | | winged helix-turn-helix domain-containing protein | low | > 100 |
| Pseudomonas aeruginosa PUPa3 | 0.67 | DQ20_RS37550 | pfpI;inference=COORDINATES | protease PfpI | 0.70 | DQ20_RS46165 | | winged helix-turn-helix domain-containing protein | low | > 101 |
| Paraburkholderia sabiae LMG 24235 | 0.58 | QEN71_RS10790 | | type 1 glutamine amidotransferase domain-containing protein | 0.38 | QEN71_RS35010 | | response regulator | low | > 153 |
| Ralstonia sp. UNC404CL21Col | 0.56 | ABZR87_RS06165 | | type 1 glutamine amidotransferase domain-containing protein | 0.39 | ABZR87_RS03100 | | response regulator transcription factor | low | > 80 |
| Pseudomonas simiae WCS417 | 0.39 | PS417_15650 | | glutamine amidotransferase | 0.78 | PS417_21535 | | chemotaxis protein CheY | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.39 | PFLU_RS17630 | | type 1 glutamine amidotransferase | 0.78 | PFLU_RS23150 | | response regulator | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.39 | PFLU_RS17630 | | type 1 glutamine amidotransferase | 0.78 | PFLU_RS23150 | | response regulator | low | > 109 |
| Pseudomonas lactucae CFBP13502 | 0.38 | GEMAOFIL_03405 | | General stress protein 18 | 0.78 | GEMAOFIL_04451 | | Transcriptional regulatory protein RstA | low | > 96 |
| Enterobacter asburiae PDN3 | 0.38 | EX28DRAFT_3202 | | intracellular protease, PfpI family | 0.37 | EX28DRAFT_1549 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | — | — |
| Pseudomonas sp. RS175 | 0.37 | PFR28_01948 | | Putative cysteine protease YraA | 0.78 | PFR28_03249 | | Transcriptional regulatory protein RstA | low | > 88 |
| Pseudomonas orientalis W4I3 | 0.36 | QF045_RS17630 | | type 1 glutamine amidotransferase domain-containing protein | 0.77 | QF045_RS23625 | | response regulator | low | > 93 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.35 | GFF1515 | | General stress protein 18 | 0.36 | GFF1800 | | Transcriptional regulatory protein RstA | — | — |
| Escherichia coli BW25113 | 0.34 | b3153 | yhbO | orf, hypothetical protein (VIMSS) | 0.37 | b1608 | rstA | DNA-binding response regulator in two-component regulatory system with RstB (RefSeq) | low | > 76 |
| Escherichia coli ECRC98 | 0.34 | JDDGAC_21825 | yhbO | protein/nucleic acid deglycase | 0.36 | JDDGAC_02255 | rstA | two-component system response regulator RstA | low | > 87 |
| Escherichia coli ECRC101 | 0.34 | MCAODC_08720 | yhbO | protein/nucleic acid deglycase | 0.36 | MCAODC_17745 | rstA | two-component system response regulator RstA | low | > 87 |
| Escherichia coli BL21 | 0.34 | ECD_03020 | | stress-resistance protein | 0.37 | ECD_01577 | | response regulator of RstAB two-component system | low | > 61 |
| Escherichia coli ECRC102 | 0.34 | NIAGMN_15960 | yhbO | protein/nucleic acid deglycase | 0.36 | NIAGMN_00410 | rstA | two-component system response regulator RstA | low | > 80 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.34 | OHPLBJKB_00547 | | Protein/nucleic acid deglycase 2 | 0.37 | OHPLBJKB_02118 | | Transcriptional regulatory protein RstA | low | > 74 |
| Escherichia coli ECRC62 | 0.34 | BNILDI_01530 | yhbO | protein/nucleic acid deglycase | 0.36 | BNILDI_16960 | rstA | two-component system response regulator RstA | low | > 75 |
| Escherichia coli ECRC100 | 0.34 | OKFHMN_18200 | yhbO | protein/nucleic acid deglycase | 0.36 | OKFHMN_27665 | rstA | two-component system response regulator RstA | — | — |
| Pantoea sp. MT58 | 0.34 | IAI47_16940 | | type 1 glutamine amidotransferase | 0.40 | IAI47_09545 | | two-component system response regulator RstA | low | > 76 |
| Escherichia coli ECRC99 | 0.34 | KEDOAH_09950 | yhbO | protein/nucleic acid deglycase | 0.36 | KEDOAH_00440 | rstA | two-component system response regulator RstA | — | — |
| Escherichia coli ECOR27 | 0.34 | NOLOHH_10000 | yhbO | protein/nucleic acid deglycase | 0.36 | NOLOHH_18170 | rstA | two-component system response regulator RstA | — | — |
| Escherichia coli ECOR38 | 0.34 | HEPCGN_17075 | yhbO | protein/nucleic acid deglycase | 0.37 | HEPCGN_06040 | rstA | two-component system response regulator RstA | low | > 88 |
| Escherichia fergusonii Becca | 0.34 | EFB2_00670 | | Protein/nucleic acid deglycase 2 | 0.36 | EFB2_02384 | | Transcriptional regulatory protein RstA | low | > 86 |
| Acinetobacter radioresistens SK82 | 0.33 | MPMX26_03027 | | General stress protein 18 | 0.57 | MPMX26_02559 | | Transcriptional regulatory protein RstA | — | — |
| Pantoea agglomerans CFBP13505 P0401 | 0.33 | PagCFBP13505_RS09035 | | type 1 glutamine amidotransferase | 0.40 | PagCFBP13505_RS06610 | | two-component system response regulator RstA | low | > 74 |
| Shewanella oneidensis MR-1 | 0.27 | SO1378 | | ThiJ/PfpI family protein (NCBI ptt file) | 0.44 | SO3594 | | transcriptional regulatory protein RstA, putative (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.26 | Shewana3_2995 | | PfpI family intracellular peptidase (RefSeq) | 0.44 | Shewana3_3184 | | two component transcriptional regulator (RefSeq) | low | > 73 |
| Pseudomonas segetis P6 | 0.25 | ACVTMO_RS18515 | | DJ-1/PfpI family protein | 0.71 | ACVTMO_RS15930 | | winged helix-turn-helix domain-containing protein | low | > 75 |
| Ralstonia solanacearum UW163 | 0.25 | UW163_RS02370 | | glutamine amidotransferase | 0.40 | UW163_RS06165 | | DNA-binding response regulator | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.25 | RALBFv3_RS11210 | | glutamine amidotransferase | 0.40 | RALBFv3_RS07455 | | DNA-binding response regulator | low | > 76 |
| Ralstonia solanacearum PSI07 | 0.24 | RPSI07_RS22090 | | protease | 0.41 | RPSI07_RS09795 | | DNA-binding response regulator | low | > 81 |
| Pseudomonas fluorescens GW456-L13 | 0.24 | PfGW456L13_4556 | | ThiJ/PfpI family protein | 0.79 | PfGW456L13_2007 | | Transcriptional regulatory protein RstA | low | > 87 |
| Serratia liquefaciens MT49 | 0.24 | IAI46_12695 | | DJ-1/PfpI family protein | 0.38 | IAI46_13300 | | two-component system response regulator RstA | — | — |
| Ralstonia solanacearum GMI1000 | 0.24 | RS_RS02060 | | protease | 0.40 | RS_RS15395 | | DNA-binding response regulator | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.24 | AO356_04780 | | glutamine amidotransferase | 0.78 | AO356_18940 | | chemotaxis protein CheY | low | > 104 |
| Pseudomonas sp. SVBP6 | 0.24 | COO64_RS12170 | | DJ-1/PfpI family protein | 0.70 | COO64_RS07450 | | response regulator transcription factor | low | > 93 |
| Cupriavidus basilensis FW507-4G11 | 0.24 | RR42_RS02120 | | glutamine amidotransferase | 0.36 | RR42_RS14260 | | transcriptional regulator | low | > 128 |
| Marinobacter adhaerens HP15 | 0.23 | HP15_874 | | intracellular protease, PfpI family | 0.65 | HP15_746 | | two component transcriptional regulator, winged helix family | low | > 73 |
| Pseudomonas fluorescens FW300-N1B4 | 0.22 | Pf1N1B4_3266 | | ThiJ/PfpI family protein | 0.80 | Pf1N1B4_3478 | | Transcriptional regulatory protein RstA | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.22 | AO353_17405 | | glutamine amidotransferase | 0.79 | AO353_02835 | | chemotaxis protein CheY | low | > 101 |
| Acinetobacter baumannii LAC-4 | 0.22 | RR41_RS03565 | | DJ-1/PfpI family protein | 0.57 | RR41_RS15530 | | response regulator transcription factor BfmR | — | — |
| Erwinia tracheiphila HP pepo 2.2 | 0.15 | IJEDHG_16330 | yajL | protein deglycase YajL | 0.36 | IJEDHG_23115 | rstA | two-component system response regulator RstA | low | > 61 |
| Erwinia tracheiphila SCR3 | 0.15 | LU632_RS18460 | yajL | protein deglycase YajL | 0.36 | LU632_RS11455 | rstA | two-component system response regulator RstA | low | > 73 |
Not shown: 38 genomes with orthologs for Psyr_4763 only; 13 genomes with orthologs for Psyr_3716 only